RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 KIAA1958Q8N8K9 716 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 RHBDD1Q8TEB9 315 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 IPO4Q8TEX9 1081 aaKnown RBP17.29■□□□□ 0.36
CLK3-223ENST00000568488 KCNN1Q92952 543 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 SPATA17Q96L03 361 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 MIR1-1HGQ9H1L0 117 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 SLC6A17Q9H1V8 727 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 GAREM1Q9H706 876 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 CD93Q9NPY3 652 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 TM7SF3Q9NS93 570 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 TBC1D14Q9P2M4 693 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 ODF2LQ9ULJ1 636 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 HELZP42694 1942 aaKnown RBP17.29■□□□□ 0.36
CLK3-223ENST00000568488 A0A1B0GTW7 788 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 CYSRT1A8MQ03 144 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 MEI4A8MW99 385 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 TK2O00142 265 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 LAD1O00515 517 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 TULP3O75386 442 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 IL18RAPO95256 599 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 KRT18P05783 430 aaKnown RBP17.28■□□□□ 0.36
CLK3-223ENST00000568488 KRT19P08727 400 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 PLCG1P19174 1290 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 PSMC1P62191 440 aaKnown RBP17.28■□□□□ 0.36
CLK3-223ENST00000568488 CYP27A1Q02318 531 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 ANO4Q32M45 955 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 HYIQ5T013 277 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 KIAA1324Q6UXG2 1013 aaKnown RBP17.28■□□□□ 0.36
CLK3-223ENST00000568488 GPBP1Q86WP2 473 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 MIB1Q86YT6 1006 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 CSGALNACT2Q8N6G5 542 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 FBXO18Q8NFZ0 1043 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 MYLPFQ96A32 169 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 ACOX2Q99424 681 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 KIF2CQ99661 725 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 PARVGQ9HBI0 331 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 TOR4AQ9NXH8 423 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 EHD2Q9NZN4 543 aa17.28■□□□□ 0.36
CLK3-223ENST00000568488 TRIM24O15164 1050 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 PRPHP41219 470 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 MATKP42679 507 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 PPP3CCP48454 512 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 ST3GAL1Q11201 340 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 IFRD2Q12894 506 aaPredicted RBP17.27■□□□□ 0.36
CLK3-223ENST00000568488 EGFLAMQ63HQ2 1017 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 SCARA3Q6AZY7 606 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 FAM171BQ6P995 826 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 VSTM1Q6UX27 236 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 CRELD2Q6UXH1 353 aaPredicted RBP17.27■□□□□ 0.36
CLK3-223ENST00000568488 DDX42Q86XP3 938 aaKnown RBP eCLIP17.27■□□□□ 0.36
CLK3-223ENST00000568488 NT5DC4Q86YG4 428 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 ZCCHC9Q8N567 271 aaKnown RBP17.27■□□□□ 0.36
CLK3-223ENST00000568488 PDCD7Q8N8D1 485 aaKnown RBP17.27■□□□□ 0.36
CLK3-223ENST00000568488 POMGNT1Q8WZA1 660 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 CDC6Q99741 560 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 SYT15Q9BQS2 421 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 HCN2Q9UL51 889 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 RAD54BQ9Y620 910 aa17.27■□□□□ 0.36
CLK3-223ENST00000568488 KALRNO60229 2985 aa17.27■□□□□ 0.35
CLK3-223ENST00000568488 ATXN7O15265 892 aaPredicted RBP17.26■□□□□ 0.35
CLK3-223ENST00000568488 CILPO75339 1184 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 CER1O95813 267 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 ITPKBP27987 946 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 GTF2BQ00403 316 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 TAF10Q12962 218 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 ETFBKMTQ8IXQ9 262 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 KCTD17Q8N5Z5 321 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 TOP6BLQ8N6T0 577 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 C1orf127Q8N9H9 656 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 TERB1Q8NA31 727 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 CACTINQ8WUQ7 758 aaKnown RBP17.26■□□□□ 0.35
CLK3-223ENST00000568488 IKZF4Q9H2S9 585 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 SH3BP1Q9Y3L3 701 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 RAI2Q9Y5P3 530 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 MAST4O15021 2626 aa17.26■□□□□ 0.35
CLK3-223ENST00000568488 E2F8A0AVK6 867 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 GABRDO14764 452 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 OLFM2O95897 454 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 PDGFRBP09619 1106 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 LMO2P25791 158 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 CD6P30203 668 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 NEK4P51957 841 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 WNT7BP56706 349 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 ANAPC15P60006 121 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 CAMK2BQ13554 666 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 SOWAHAQ2M3V2 549 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 HLA-BQ31612 363 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 TDRD10Q5VZ19 366 aaKnown RBP17.25■□□□□ 0.35
CLK3-223ENST00000568488 TMEM25Q86YD3 366 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 CCDC83Q8IWF9 413 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 LRRC52Q8N7C0 313 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 FAM184AQ8NB25 1140 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 TOE1Q96GM8 510 aaKnown RBP17.25■□□□□ 0.35
CLK3-223ENST00000568488 FAM84AQ96KN4 292 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 MRGPRX1Q96LB2 322 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 FAM213AQ9BRX8 229 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 TTLL2Q9BWV7 592 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 GPR174Q9BXC1 333 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 GDAP2Q9NXN4 497 aa17.25■□□□□ 0.35
CLK3-223ENST00000568488 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms