RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 FHOD1Q9Y613 1164 aa10.35□□□□□ -0.75
CLK3-220ENST00000567992 USP3Q9Y6I4 520 aa10.35□□□□□ -0.75
CLK3-220ENST00000567992 DMDP11532 3685 aa10.35□□□□□ -0.75
CLK3-220ENST00000567992 TRAV19A0A0A6YYK7 116 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 LGALS16A8MUM7 142 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 XPO1O14980 1071 aaKnown RBP10.34□□□□□ -0.75
CLK3-220ENST00000567992 EPHB6O15197 1021 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 GABBR2O75899 941 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 LETM1O95202 739 aaPredicted RBP10.34□□□□□ -0.75
CLK3-220ENST00000567992 CKMP06732 381 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 PNMA6AP0CW24 399 aaPredicted RBP10.34□□□□□ -0.75
CLK3-220ENST00000567992 KRT5P13647 590 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 TCF3P15923 654 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 PFKLP17858 780 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 GDI1P31150 447 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 AVPR1AP37288 418 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 PLA2G4AP47712 749 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 ZNF165P49910 485 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 MFAP3P55082 362 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 SLC7A9P82251 487 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 BST2Q10589 180 aaKnown RBP10.34□□□□□ -0.75
CLK3-220ENST00000567992 ARHGAP44Q17R89 818 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 KLHDC7AQ5VTJ3 777 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 SMYD5Q6GMV2 418 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 CCDC186Q7Z3E2 898 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 SCD5Q86SK9 330 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 CELF5Q8N6W0 485 aaKnown RBP10.34□□□□□ -0.75
CLK3-220ENST00000567992 PDZD8Q8NEN9 1154 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 UBA3Q8TBC4 463 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 DNASE1L2Q92874 299 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 ZFYVE19Q96K21 471 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 ZFRQ96KR1 1074 aaKnown RBP10.34□□□□□ -0.75
CLK3-220ENST00000567992 FAM81BQ96LP2 452 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 TRMT61BQ9BVS5 477 aaKnown RBP10.34□□□□□ -0.75
CLK3-220ENST00000567992 LSM14BQ9BX40 385 aaKnown RBP10.34□□□□□ -0.75
CLK3-220ENST00000567992 FBXO44Q9H4M3 255 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 CCSER2Q9H7U1 834 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 KIF9Q9HAQ2 790 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 ARHGEF3Q9NR81 526 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 TDP1Q9NUW8 608 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 DNAJC12Q9UKB3 198 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 CA14Q9ULX7 337 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 ARHGAP26Q9UNA1 814 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 SCML2Q9UQR0 700 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 SIK3Q9Y2K2 1263 aa10.34□□□□□ -0.75
CLK3-220ENST00000567992 M0QYV0 167 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 FOXN3O00409 490 aaPredicted RBP10.33□□□□□ -0.76
CLK3-220ENST00000567992 CHADO15335 359 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 COCHO43405 550 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 USP17L7P0C7H9 530 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 SETSIPP0DME0 302 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 UCHL3P15374 230 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 HDCP19113 662 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 RPL34P49207 117 aaKnown RBP10.33□□□□□ -0.76
CLK3-220ENST00000567992 TUBP50607 506 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 STILQ15468 1287 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 NFKBIBQ15653 356 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 CNGA2Q16280 664 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 MEA1Q16626 185 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 SKOR2Q2VWA4 1001 aaPredicted RBP10.33□□□□□ -0.76
CLK3-220ENST00000567992 FAM71AQ8IYT1 594 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 SIX5Q8N196 739 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 BPIFB1Q8TDL5 484 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 SLC35F5Q8WV83 523 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 KCTD13Q8WZ19 329 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 SECISBP2LQ93073 1101 aaKnown RBP10.33□□□□□ -0.76
CLK3-220ENST00000567992 FAM83CQ9BQN1 747 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 DDX23Q9BUQ8 820 aaKnown RBP10.33□□□□□ -0.76
CLK3-220ENST00000567992 BRD9Q9H8M2 597 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 CBX8Q9HC52 389 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 PLCB1Q9NQ66 1216 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 TRPV5Q9NQA5 729 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 CYLDQ9NQC7 956 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 CHORDC1Q9UHD1 332 aaPredicted RBP10.33□□□□□ -0.76
CLK3-220ENST00000567992 FBXL21Q9UKT6 434 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 MIA3Q5JRA6 1907 aa10.33□□□□□ -0.76
CLK3-220ENST00000567992 MUC6Q6W4X9 2439 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 A0A1W2PQH9 124 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 PES1O00541 588 aaKnown RBP10.32□□□□□ -0.76
CLK3-220ENST00000567992 ABL1P00519 1130 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 RFX1P22670 979 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 GNA15P30679 374 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 CLCN1P35523 988 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 GPD2P43304 727 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 PDE6CP51160 858 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 TKTL1P51854 596 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 VCPP55072 806 aaKnown RBP10.32□□□□□ -0.76
CLK3-220ENST00000567992 JAM2P57087 298 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 STARD6P59095 220 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 PFKPQ01813 784 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 ADIGQ0VDE8 80 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 MTF1Q14872 753 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 DRAP1Q14919 205 aaPredicted RBP10.32□□□□□ -0.76
CLK3-220ENST00000567992 SYCP1Q15431 976 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 MLF2Q15773 248 aaPredicted RBP10.32□□□□□ -0.76
CLK3-220ENST00000567992 ARHGAP29Q52LW3 1261 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 SLC44A4Q53GD3 710 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 HECTD3Q5T447 861 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 PM20D1Q6GTS8 502 aa10.32□□□□□ -0.76
CLK3-220ENST00000567992 PMF1Q6P1K2 205 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms