RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 POLR3BQ9NW08 1133 aaPredicted RBP12.09□□□□□ -0.47
CLN3-226ENST00000567160 TAB2Q9NYJ8 693 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 PTPRJQ12913 1337 aa12.09□□□□□ -0.47
CLN3-226ENST00000567160 NAV2Q8IVL1 2488 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 LRRIQ3A6PVS8 624 aaPredicted RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 PES1O00541 588 aaKnown RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 NFICP08651 508 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 PRKCSHP14314 528 aaPredicted RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 ZNF18P17022 549 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 ENGP17813 658 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 TNNI1P19237 187 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 EEF1GP26641 437 aaKnown RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 CDC25CP30307 473 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 MARSP56192 900 aaKnown RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 TFAMQ00059 246 aaKnown RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 YWHAHQ04917 246 aaPredicted RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 SOX4Q06945 474 aaPredicted RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 DUSP4Q13115 394 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 KRT31Q15323 416 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 SURF1Q15526 300 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 CC2D1AQ6P1N0 951 aaPredicted RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 ALKAL1Q6UXT8 129 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 GAREM2Q75VX8 874 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 LPCAT2Q7L5N7 544 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 DNAJB7Q7Z6W7 309 aaPredicted RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 TRIM59Q8IWR1 403 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 EFCAB13Q8IY85 973 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 ANKRD20A12PQ8NF67 263 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 TMC2Q8TDI7 906 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 PARD3BQ8TEW8 1205 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 HNRNPLLQ8WVV9 542 aaKnown RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 LRIG1Q96JA1 1093 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 ZMAT2Q96NC0 199 aaKnown RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 PGLYRP2Q96PD5 576 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 BBC3Q96PG8 261 aaPredicted RBP12.08□□□□□ -0.48
CLN3-226ENST00000567160 FAM83CQ9BQN1 747 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 VPS16Q9H269 839 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 ASB7Q9H672 318 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 PLEKHA5Q9HAU0 1116 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 CNTN3Q9P232 1028 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 PCDHB8Q9UN66 801 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 INVSQ9Y283 1065 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLN3-226ENST00000567160 APC2O95996 2303 aa12.08□□□□□ -0.48
CLN3-226ENST00000567160 KIAA1549LQ6ZVL6 1849 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 TNFRSF10BO14763 440 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 TMEM191BP0C7N4 346 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 GCLMP48507 274 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 GALK1P51570 392 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 GUCY2FP51841 1108 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 POU5F1Q01860 360 aaKnown RBP12.07□□□□□ -0.48
CLN3-226ENST00000567160 TMEM132DQ14C87 1099 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 VEPH1Q14D04 833 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 MAN2A1Q16706 1144 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 XKR4Q5GH76 650 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 C1orf220Q5T0J3 134 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 USP37Q86T82 979 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 SYT12Q8IV01 421 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 CD302Q8IX05 232 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 TMEM130Q8N3G9 435 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 OR5B17Q8NGF7 314 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 SLC35C1Q96A29 364 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 C18orf25Q96B23 403 aaPredicted RBP12.07□□□□□ -0.48
CLN3-226ENST00000567160 SPACA7Q96KW9 195 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 TUBGCP2Q9BSJ2 902 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 TPSD1Q9BZJ3 242 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 MTMR12Q9C0I1 747 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 EBF3Q9H4W6 596 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 HPS4Q9NQG7 708 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 CACNA2D2Q9NY47 1150 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 LIMA1Q9UHB6 759 aaKnown RBP12.07□□□□□ -0.48
CLN3-226ENST00000567160 MYO16Q9Y6X6 1858 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 GON4LQ3T8J9 2241 aa12.07□□□□□ -0.48
CLN3-226ENST00000567160 ASXL3Q9C0F0 2248 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 OR6C75A6NL08 312 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 MAP3K13O43283 966 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 OPHN1O60890 802 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 OAZ2O95190 189 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 TNNC2P02585 160 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 TPM2P07951 284 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 KCNE1P15382 129 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 HOXD12P35452 270 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 AVPR1AP37288 418 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 COPB1P53618 953 aaKnown RBP12.06□□□□□ -0.48
CLN3-226ENST00000567160 PPP3CAQ08209 521 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 KCNH2Q12809 1159 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 GPR17Q13304 367 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 BIRC3Q13489 604 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 PDGFRLQ15198 375 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 DUOXA2Q1HG44 320 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 SLC23A3Q6PIS1 610 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 RASSF3Q86WH2 238 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 WDR49Q8IV35 697 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 CPA6Q8N4T0 437 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 CACTINQ8WUQ7 758 aaKnown RBP12.06□□□□□ -0.48
CLN3-226ENST00000567160 ZNF516Q92618 1163 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 ANKRD36BP1Q96IX9 119 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 KIF9Q9HAQ2 790 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 INTS13Q9NVM9 706 aa12.06□□□□□ -0.48
CLN3-226ENST00000567160 TUBGCP4Q9UGJ1 667 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms