RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 CLDN5O00501 218 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 EPN2O95208 641 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 LIMK1P53667 647 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 DHCR24Q15392 516 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 CEP135Q66GS9 1140 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 SV2AQ7L0J3 742 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 FILIP1Q7Z7B0 1213 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 C12orf50Q8NA57 414 aaPredicted RBP15.81■□□□□ 0.12
CLN3-222ENST00000566083 CCDC150Q8NCX0 1101 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 TSTD1Q8NFU3 115 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 PLEKHO2Q8TD55 490 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 CFAP97Q9P2B7 532 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 GTF3C3Q9Y5Q9 886 aa15.81■□□□□ 0.12
CLN3-222ENST00000566083 HELZP42694 1942 aaKnown RBP15.81■□□□□ 0.12
CLN3-222ENST00000566083 FAM237AA0A1B0GTK4 181 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 FAM92AA1XBS5 289 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 AP1G2O75843 785 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 RHOBTB3O94955 611 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 ASS1P00966 412 aaKnown RBP15.8■□□□□ 0.12
CLN3-222ENST00000566083 APODP05090 189 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 CYP17A1P05093 508 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 KRT13P13646 458 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 OPRD1P41143 372 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 PXNP49023 591 aaPredicted RBP15.8■□□□□ 0.12
CLN3-222ENST00000566083 VAMP7P51809 220 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 DGKEP52429 567 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 SLC5A3P53794 718 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 CACNA2D1P54289 1103 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 CDH8P55286 799 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 ZXDBP98169 803 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 IFRD2Q12894 506 aaPredicted RBP15.8■□□□□ 0.12
CLN3-222ENST00000566083 USP39Q53GS9 565 aaKnown RBP15.8■□□□□ 0.12
CLN3-222ENST00000566083 SPRYD3Q8NCJ5 442 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 USP33Q8TEY7 942 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 HHIPQ96QV1 700 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 KCNK16Q96T55 309 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 PNKPQ96T60 521 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 NACA2Q9H009 215 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 CYP3A43Q9HB55 503 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 SMPD4Q9NXE4 827 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 SH3BP1Q9Y3L3 701 aa15.8■□□□□ 0.12
CLN3-222ENST00000566083 A0A0A0MRY4 1105 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 A0A1W2PQ27 194 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 A0A1W2PQ64 194 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 A0A1W2PQD8 194 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 TNFRSF10BO14763 440 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 ALDH1A2O94788 518 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 VNN1O95497 513 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 GRIA2P42262 883 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 PIK3CAP42336 1068 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 GAD2Q05329 585 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 GOLGA8FQ08AF8 430 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 GOLGA8DPQ0D2H9 430 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 PLK5Q496M5 336 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 AASDHQ4L235 1098 aaPredicted RBP15.79■□□□□ 0.12
CLN3-222ENST00000566083 BTBD8Q5XKL5 378 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 IL31Q6EBC2 164 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 ACOT1Q86TX2 421 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 KBTBD6Q86V97 674 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 FUKQ8N0W3 1084 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 TTC39CQ8N584 583 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 KCNV2Q8TDN2 545 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 FAXDC2Q96IV6 333 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 ARRDC1-AS1Q9H2J1 176 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 CSNK1G1Q9HCP0 422 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 TLR8Q9NR97 1041 aaKnown RBP15.79■□□□□ 0.12
CLN3-222ENST00000566083 VPS45Q9NRW7 570 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 KRT82Q9NSB4 513 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 TMEM30AQ9NV96 361 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 CHORDC1Q9UHD1 332 aaPredicted RBP15.79■□□□□ 0.12
CLN3-222ENST00000566083 MMP17Q9ULZ9 603 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 ACACBO00763 2458 aa15.79■□□□□ 0.12
CLN3-222ENST00000566083 K7EQS6 105 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 COCHO43405 550 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 ZDHHC11BP0C7U3 371 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 ADH5P11766 374 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 NR2F2P24468 414 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 PSMC2P35998 433 aaKnown RBP15.78■□□□□ 0.12
CLN3-222ENST00000566083 TNFRSF4P43489 277 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 NDST1P52848 882 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 DLG4P78352 724 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 NAIF1Q69YI7 327 aaPredicted RBP15.78■□□□□ 0.12
CLN3-222ENST00000566083 RHBDF2Q6PJF5 856 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 SCARA5Q6ZMJ2 495 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 PAQR9Q6ZVX9 377 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 GUF1Q8N442 669 aaKnown RBP15.78■□□□□ 0.12
CLN3-222ENST00000566083 EZH1Q92800 747 aaPredicted RBP15.78■□□□□ 0.12
CLN3-222ENST00000566083 CNOT6LQ96LI5 555 aaKnown RBP15.78■□□□□ 0.12
CLN3-222ENST00000566083 NT5C1AQ9BXI3 368 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 FAM124BQ9H5Z6 455 aaPredicted RBP15.78■□□□□ 0.12
CLN3-222ENST00000566083 PNPLA8Q9NP80 782 aa15.78■□□□□ 0.12
CLN3-222ENST00000566083 DCDC2BA2VCK2 349 aa15.77■□□□□ 0.12
CLN3-222ENST00000566083 KAT7O95251 611 aa15.77■□□□□ 0.12
CLN3-222ENST00000566083 HLA-DRAP01903 254 aa15.77■□□□□ 0.12
CLN3-222ENST00000566083 FAM200BP0CF97 657 aa15.77■□□□□ 0.12
CLN3-222ENST00000566083 GTF2H1P32780 548 aa15.77■□□□□ 0.12
CLN3-222ENST00000566083 INCA1Q0VD86 236 aa15.77■□□□□ 0.12
CLN3-222ENST00000566083 BYSLQ13895 437 aaKnown RBP15.77■□□□□ 0.12
CLN3-222ENST00000566083 CRY1Q16526 586 aa15.77■□□□□ 0.12
CLN3-222ENST00000566083 C2orf27AQ580R0 203 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms