RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 RPN1P04843 607 aaKnown RBP18.17■□□□□ 0.5
CLN3-216ENST00000565316 MYL1P05976 194 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 ZDHHC11BP0C7U3 371 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 MBL2P11226 248 aaPredicted RBP18.17■□□□□ 0.5
CLN3-216ENST00000565316 CMA1P23946 247 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 SLC6A11P48066 632 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 TUBP50607 506 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 MRPS21P82921 87 aaKnown RBP18.17■□□□□ 0.5
CLN3-216ENST00000565316 CCDC6Q16204 474 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 ZACNQ401N2 412 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 AASDHQ4L235 1098 aaPredicted RBP18.17■□□□□ 0.5
CLN3-216ENST00000565316 C2orf27AQ580R0 203 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 RASSF3Q86WH2 238 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 FUKQ8N0W3 1084 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 CRYBG2Q8N1P7 616 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 C12orf50Q8NA57 414 aaPredicted RBP18.17■□□□□ 0.5
CLN3-216ENST00000565316 TSTD1Q8NFU3 115 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 SCAMP5Q8TAC9 235 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 TMC2Q8TDI7 906 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 TAF4BQ92750 862 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 FBXO32Q969P5 355 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 SMARCD1Q96GM5 515 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 CNTNAP3BQ96NU0 1288 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 CNTNAP3Q9BZ76 1288 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 DMAP1Q9NPF5 467 aaPredicted RBP18.17■□□□□ 0.5
CLN3-216ENST00000565316 VPS45Q9NRW7 570 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 RXFP3Q9NSD7 469 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 TBC1D14Q9P2M4 693 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 MMP17Q9ULZ9 603 aa18.17■□□□□ 0.5
CLN3-216ENST00000565316 CEP295Q9C0D2 2601 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 ANTXRLA6NF34 631 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 IKBKBO14920 756 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 DCLK1O15075 740 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 COCHO43405 550 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 RHOBTB1O94844 696 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 ADH1CP00326 375 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 NR3C1P04150 777 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 MPLP40238 635 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 SLC5A3P53794 718 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 SEC13P55735 322 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 DLG4P78352 724 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 MESP2Q0VG99 397 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 IFRD2Q12894 506 aaPredicted RBP18.16■□□□□ 0.5
CLN3-216ENST00000565316 ELF2Q15723 593 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 SGSM1Q2NKQ1 1148 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 HECTD3Q5T447 861 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 ELMO3Q96BJ8 720 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 OTUB2Q96DC9 234 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 PNKPQ96T60 521 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 MED10Q9BTT4 135 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 CHORDC1Q9UHD1 332 aaPredicted RBP18.16■□□□□ 0.5
CLN3-216ENST00000565316 HPSEQ9Y251 543 aa18.16■□□□□ 0.5
CLN3-216ENST00000565316 SCAMP3O14828 347 aaKnown RBP18.15■□□□□ 0.5
CLN3-216ENST00000565316 AP1G2O75843 785 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 ASS1P00966 412 aaKnown RBP18.15■□□□□ 0.5
CLN3-216ENST00000565316 P4HA1P13674 534 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 PFKFB1P16118 471 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 DGKEP52429 567 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 HSF5Q4G112 596 aaPredicted RBP18.15■□□□□ 0.5
CLN3-216ENST00000565316 C1orf220Q5T0J3 134 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 SCARA5Q6ZMJ2 495 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 SV2AQ7L0J3 742 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 ACOT1Q86TX2 421 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 C11orf74Q86VG3 221 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 UNC93AQ86WB7 457 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 SFTPA1Q8IWL2 248 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 ZMIZ2Q8NF64 920 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 CNOT6LQ96LI5 555 aaKnown RBP18.15■□□□□ 0.5
CLN3-216ENST00000565316 SMOQ99835 787 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 SMOC1Q9H4F8 434 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 CSNK1G1Q9HCP0 422 aa18.15■□□□□ 0.5
CLN3-216ENST00000565316 CACNA1BQ00975 2339 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 A0A1B0GVL5 298 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 BCLAF3A2AJT9 711 aaKnown RBP18.14■□□□□ 0.49
CLN3-216ENST00000565316 MAPK13O15264 365 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 KAT7O95251 611 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 ADH5P11766 374 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 GRIA2P42262 883 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 CRY1Q16526 586 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 USP39Q53GS9 565 aaKnown RBP18.14■□□□□ 0.49
CLN3-216ENST00000565316 STPG1Q5TH74 334 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 IL31Q6EBC2 164 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 C12orf40Q86WS4 652 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 PHTF2Q8N3S3 785 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 CCDC33Q8N5R6 958 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 OLIG1Q8TAK6 271 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 CCSER2Q9H7U1 834 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 KRT82Q9NSB4 513 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 GMIPQ9P107 970 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 TRAF3IP3Q9Y228 551 aa18.14■□□□□ 0.49
CLN3-216ENST00000565316 FAM237AA0A1B0GTK4 181 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.13■□□□□ 0.49
CLN3-216ENST00000565316 BEST1O76090 585 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 APODP05090 189 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 HNRNPLP14866 589 aaKnown RBP eCLIP18.13■□□□□ 0.49
CLN3-216ENST00000565316 TNFRSF4P43489 277 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 KIR2DL1P43626 348 aaPredicted RBP18.13■□□□□ 0.49
CLN3-216ENST00000565316 ASPAP45381 313 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 NDST1P52848 882 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 NFIL3Q16649 462 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms