RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 DUSP9Q99956 384 aaKnown RBP15.76■□□□□ 0.11
CLN3-213ENST00000565047 KRT82Q9NSB4 513 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 FAM49BQ9NUQ9 324 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 CPQQ9Y646 472 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 ATP8B3O60423 1300 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 TRIM49BA6NDI0 452 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 SLC16A3O15427 465 aaKnown RBP15.75■□□□□ 0.11
CLN3-213ENST00000565047 GREM1O60565 184 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 GADD45BO75293 160 aaPredicted RBP15.75■□□□□ 0.11
CLN3-213ENST00000565047 DRD1P21728 446 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 OPRD1P41143 372 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 TUBP50607 506 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 MAP3K7CLP57077 242 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 FKBP3Q00688 224 aaKnown RBP15.75■□□□□ 0.11
CLN3-213ENST00000565047 CLEC20AQ6ZU45 233 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 CPA6Q8N4T0 437 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 PDZD8Q8NEN9 1154 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 FBXO32Q969P5 355 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 P2RY13Q9BPV8 354 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 MED10Q9BTT4 135 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 NT5C1AQ9BXI3 368 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 CCSER2Q9H7U1 834 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 OSER1Q9NX31 292 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 RAB20Q9NX57 234 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 GMIPQ9P107 970 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 MAN1B1Q9UKM7 699 aa15.75■□□□□ 0.11
CLN3-213ENST00000565047 GOLGA6L4A6NEF3 574 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 ANTXRLA6NF34 631 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 SMC2O95347 1197 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 IFNAR2P48551 515 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 FNTBP49356 437 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 MXI1P50539 228 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 AMPD2Q01433 879 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 IFRD2Q12894 506 aaPredicted RBP15.74■□□□□ 0.11
CLN3-213ENST00000565047 PPP2R5DQ14738 602 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 RHBDF2Q6PJF5 856 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 FILIP1Q7Z7B0 1213 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 FBXL13Q8NEE6 735 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 TATDN2Q93075 761 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 SMARCE1Q969G3 411 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 WBP2Q969T9 261 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 SLC35C1Q96A29 364 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 CYFIP2Q96F07 1278 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 ARID3AQ99856 593 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 MMRN2Q9H8L6 949 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 PNPLA8Q9NP80 782 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 POLR3BQ9NW08 1133 aaPredicted RBP15.74■□□□□ 0.11
CLN3-213ENST00000565047 SMPD4Q9NXE4 827 aa15.74■□□□□ 0.11
CLN3-213ENST00000565047 SMG5Q9UPR3 1016 aaKnown RBP15.74■□□□□ 0.11
CLN3-213ENST00000565047 PPP1R3GB7ZBB8 358 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 RNF40O75150 1001 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 ABL1P00519 1130 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 CYP17A1P05093 508 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 FAM200BP0CF97 657 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 EPB41P11171 864 aaKnown RBP15.73■□□□□ 0.11
CLN3-213ENST00000565047 LRRC63Q05C16 580 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 MESP2Q0VG99 397 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 DHCR24Q15392 516 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 HECTD3Q5T447 861 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 PPP1R26Q5T8A7 1209 aaPredicted RBP15.73■□□□□ 0.11
CLN3-213ENST00000565047 TTI2Q6NXR4 508 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 LONP2Q86WA8 852 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 SLC4A11Q8NBS3 891 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 CD101Q93033 1021 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 GTPBP4Q9BZE4 634 aaKnown RBP15.73■□□□□ 0.11
CLN3-213ENST00000565047 IMPG2Q9BZV3 1241 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 FAM124BQ9H5Z6 455 aaPredicted RBP15.73■□□□□ 0.11
CLN3-213ENST00000565047 CISHQ9NSE2 258 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 CFAP97Q9P2B7 532 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 SCML2Q9UQR0 700 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 USP3Q9Y6I4 520 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 SPTBN4Q9H254 2564 aa15.73■□□□□ 0.11
CLN3-213ENST00000565047 A0A0A0MRY4 1105 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 CCDC163A0A0D9SF12 145 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 E2F8A0AVK6 867 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 K7EQS6 105 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 PMM2O15305 246 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 NFATC1O95644 943 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 TBX18O95935 607 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 CD58P19256 250 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 ADORA2BP29275 332 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 RAD23BP54727 409 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 SRSF5Q13243 272 aaKnown RBP15.72■□□□□ 0.11
CLN3-213ENST00000565047 MORC3Q14149 939 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 FBXO43Q4G163 708 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 ISM2Q6H9L7 571 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 FOXR2Q6PJQ5 311 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 WDR5BQ86VZ2 330 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 UBR7Q8N806 425 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 TTC16Q8NEE8 873 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 DHTKD1Q96HY7 919 aaPredicted RBP15.72■□□□□ 0.11
CLN3-213ENST00000565047 KLF16Q9BXK1 252 aaPredicted RBP15.72■□□□□ 0.11
CLN3-213ENST00000565047 DUSP16Q9BY84 665 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 FBXO44Q9H4M3 255 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 NMUR1Q9HB89 426 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 CYLDQ9NQC7 956 aa15.72■□□□□ 0.11
CLN3-213ENST00000565047 KIAA1549LQ6ZVL6 1849 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 SCAMP3O14828 347 aaKnown RBP15.71■□□□□ 0.11
CLN3-213ENST00000565047 STX10O60499 249 aa15.71■□□□□ 0.11
CLN3-213ENST00000565047 MBL2P11226 248 aaPredicted RBP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms