RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 DRICH1Q6PGQ1 229 aaPredicted RBP14.08□□□□□ -0.16
CLK3-215ENST00000564353 TSHZ1Q6ZSZ6 1077 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 NLRP9Q7RTR0 991 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 TTC7BQ86TV6 843 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 ACOT1Q86TX2 421 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 FGD4Q96M96 766 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 APOL6Q9BWW8 343 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 CEP41Q9BYV8 373 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 PTPRHQ9HD43 1115 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 COX16Q9P0S2 106 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 ARMCX1Q9P291 453 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 SLC17A6Q9P2U8 582 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 TSPAN16Q9UKR8 245 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 STRIP2Q9ULQ0 834 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 CSADQ9Y600 493 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 LPXNO60711 386 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 MT-ND3P03897 115 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 GM2AP17900 193 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 ROR1Q01973 937 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 EFHC2Q5JST6 749 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 CDHR3Q6ZTQ4 885 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 CCDC125Q86Z20 511 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 RIOX2Q8IUF8 465 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 GBP7Q8N8V2 638 aaPredicted RBP14.07□□□□□ -0.16
CLK3-215ENST00000564353 DCAKDQ8WVC6 231 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 C10orf82Q8WW14 230 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 IFT122Q9HBG6 1241 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 ACTL7BQ9Y614 415 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 IKBKGQ9Y6K9 419 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 USH1CQ9Y6N9 552 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 PRPF4O43172 522 aaKnown RBP eCLIP14.07□□□□□ -0.16
CLK3-215ENST00000564353 CYP2C8P10632 490 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 PAX7P23759 505 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 ABCD1P33897 745 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 GRIA1P42261 906 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 GPD2P43304 727 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 CRADDP78560 199 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 BSPRYQ5W0U4 402 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 UNC5BQ8IZJ1 945 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 NLRP7Q8WX94 980 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 ZNF518BQ9C0D4 1074 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 ZFP69BQ9UJL9 534 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 STARD13Q9Y3M8 1113 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 MFHAS1Q9Y4C4 1052 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 MAD1L1Q9Y6D9 718 aa14.07□□□□□ -0.16
CLK3-215ENST00000564353 CYB561D2O14569 222 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 MED7O43513 233 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 EDNRBP24530 442 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 PHBP35232 272 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 GMPRP36959 345 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 CCDC142Q17RM4 750 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 C11orf91Q3C1V1 193 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 SLC10A6Q3KNW5 377 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 RFWD3Q6PCD5 774 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 NDRG1Q92597 394 aaKnown RBP14.06□□□□□ -0.16
CLK3-215ENST00000564353 TBC1D10AQ9BXI6 508 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 IRAK4Q9NWZ3 460 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 IL1RAPL1Q9NZN1 696 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 KANSL3Q9P2N6 904 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 SMG5Q9UPR3 1016 aaKnown RBP14.06□□□□□ -0.16
CLK3-215ENST00000564353 PRPSAP2O60256 369 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 CILPO75339 1184 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 ARF4P18085 180 aaPredicted RBP14.06□□□□□ -0.16
CLK3-215ENST00000564353 ENPEPQ07075 957 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 PMF1Q6P1K2 205 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 RIBC1Q8N443 379 aaPredicted RBP14.06□□□□□ -0.16
CLK3-215ENST00000564353 NIPA2Q8N8Q9 360 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 L3MBTL3Q96JM7 780 aaPredicted RBP14.06□□□□□ -0.16
CLK3-215ENST00000564353 ZNF570Q96NI8 536 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 FZD8Q9H461 694 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 ACSS3Q9H6R3 686 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 HEY2Q9UBP5 337 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 MAGED2Q9UNF1 606 aaPredicted RBP14.06□□□□□ -0.16
CLK3-215ENST00000564353 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.06□□□□□ -0.16
CLK3-215ENST00000564353 SNX9Q9Y5X1 595 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 LCTP09848 1927 aa14.06□□□□□ -0.16
CLK3-215ENST00000564353 B4GALT4O60513 344 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 CNMDO75829 334 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 PDGFRBP09619 1106 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 PROZP22891 400 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 CDH5P33151 784 aaPredicted RBP14.05□□□□□ -0.16
CLK3-215ENST00000564353 AP3M2P53677 418 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 GOLGA7BQ2TAP0 167 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 PPP1R26Q5T8A7 1209 aaPredicted RBP14.05□□□□□ -0.16
CLK3-215ENST00000564353 MPP5Q8N3R9 675 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 MANSC1Q9H8J5 431 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 PRDM16Q9HAZ2 1276 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 C15orf41Q9Y2V0 281 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 APOC4-APOC2K7ER74 178 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 APOC2P02655 101 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 INHBAP08476 426 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 SERPINB3P29508 390 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 RABGGTBP53611 331 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 TAP1Q03518 808 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 ZBTB16Q05516 673 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 KCTD2Q14681 263 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 ILDR2Q71H61 639 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 POLNQ7Z5Q5 900 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 SESTD1Q86VW0 696 aa14.05□□□□□ -0.16
CLK3-215ENST00000564353 FAM13CQ8NE31 585 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms