RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CD19P15391 556 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 ACO1P21399 889 aaKnown RBP14.14□□□□□ -0.15
CLK3-213ENST00000563842 IFNAR2P48551 515 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 PSEN1P49768 467 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 USP4Q13107 963 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 RUNX3Q13761 415 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 STILQ15468 1287 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 ZNF77Q15935 545 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 TMEM270Q6UE05 265 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 SASS6Q6UVJ0 657 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 GBP6Q6ZN66 633 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 ENOSF1Q7L5Y1 443 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 ANKRD52Q8NB46 1076 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 PRSS33Q8NF86 280 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 SH3RF2Q8TEC5 729 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 ZFYVE19Q96K21 471 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 SLC22A12Q96S37 553 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 FAM83CQ9BQN1 747 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 SCML2Q9UQR0 700 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 PCDHB4Q9Y5E5 795 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 ATG2BQ96BY7 2078 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 SLC9A3R1O14745 358 aaPredicted RBP14.13□□□□□ -0.15
CLK3-213ENST00000563842 ZDHHC11BP0C7U3 371 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 MBL2P11226 248 aaPredicted RBP14.13□□□□□ -0.15
CLK3-213ENST00000563842 CD72P21854 359 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 TARSP26639 723 aaKnown RBP14.13□□□□□ -0.15
CLK3-213ENST00000563842 RPS9P46781 194 aaKnown RBP14.13□□□□□ -0.15
CLK3-213ENST00000563842 BCAT1P54687 386 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 NR1H3Q13133 447 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 MAN2A1Q16706 1144 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 SMYD5Q6GMV2 418 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 RBM43Q6ZSC3 357 aaKnown RBP14.13□□□□□ -0.15
CLK3-213ENST00000563842 TADA2BQ86TJ2 420 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 CPA6Q8N4T0 437 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 UBR7Q8N806 425 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 TTC16Q8NEE8 873 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 OSCP1Q8WVF1 389 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 ATP2A3Q93084 1043 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 CLDN23Q96B33 292 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 MED15Q96RN5 788 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 IER2Q9BTL4 223 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 NACA2Q9H009 215 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 RNF38Q9H0F5 515 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 INTS2Q9H0H0 1204 aaKnown RBP14.13□□□□□ -0.15
CLK3-213ENST00000563842 ANO10Q9NW15 660 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 DUS2Q9NX74 493 aaKnown RBP14.13□□□□□ -0.15
CLK3-213ENST00000563842 GTSE1Q9NYZ3 720 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 GMIPQ9P107 970 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 CPQQ9Y646 472 aa14.13□□□□□ -0.15
CLK3-213ENST00000563842 HHLA1C9JL84 531 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 SPECC1L-ADORA2AF8WAN1 911 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 LEFTY2O00292 366 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 NFATC1O95644 943 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 CTHP32929 405 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 KIF11P52732 1056 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 MFAP3P55082 362 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 BST2Q10589 180 aaKnown RBP14.12□□□□□ -0.15
CLK3-213ENST00000563842 TCF15Q12870 199 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 LRRC32Q14392 662 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 EXOC3L4Q17RC7 722 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 CCDC183Q5T5S1 534 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 IRF2BP1Q8IU81 584 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 ARHGAP18Q8N392 663 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 CDK5RAP1Q96SZ6 601 aaKnown RBP14.12□□□□□ -0.15
CLK3-213ENST00000563842 DLGAP2Q9P1A6 1054 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 TSPAN16Q9UKR8 245 aa14.12□□□□□ -0.15
CLK3-213ENST00000563842 NDRG2Q9UN36 371 aaKnown RBP14.12□□□□□ -0.15
CLK3-213ENST00000563842 XPO1O14980 1071 aaKnown RBP14.11□□□□□ -0.15
CLK3-213ENST00000563842 COCHO43405 550 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 TLR5O60602 858 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 SETSIPP0DME0 302 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 ATP5C1P36542 298 aaKnown RBP14.11□□□□□ -0.15
CLK3-213ENST00000563842 NHLH1Q02575 133 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 TNK2Q07912 1038 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 GOLGA8FQ08AF8 430 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 GOLGA8DPQ0D2H9 430 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 CNGA2Q16280 664 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 GOLGA7BQ2TAP0 167 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 DGKKQ5KSL6 1271 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 TRIM65Q6PJ69 517 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 RRAGAQ7L523 313 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 CCDC186Q7Z3E2 898 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 ARHGEF19Q8IW93 802 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 FANCMQ8IYD8 2048 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 RBBP8NLQ8NC74 664 aaPredicted RBP14.11□□□□□ -0.15
CLK3-213ENST00000563842 ENOX1Q8TC92 643 aaKnown RBP14.11□□□□□ -0.15
CLK3-213ENST00000563842 ATOH1Q92858 354 aaPredicted RBP14.11□□□□□ -0.15
CLK3-213ENST00000563842 TUBGCP2Q9BSJ2 902 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 EBF3Q9H4W6 596 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 LRRC4Q9HBW1 653 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 UBE2TQ9NPD8 197 aaPredicted RBP14.11□□□□□ -0.15
CLK3-213ENST00000563842 HPS4Q9NQG7 708 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 TBC1D14Q9P2M4 693 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 MTF2Q9Y483 593 aaPredicted RBP14.11□□□□□ -0.15
CLK3-213ENST00000563842 USP3Q9Y6I4 520 aa14.11□□□□□ -0.15
CLK3-213ENST00000563842 COL4A3Q01955 1670 aa14.1□□□□□ -0.15
CLK3-213ENST00000563842 E2F8A0AVK6 867 aa14.1□□□□□ -0.15
CLK3-213ENST00000563842 SHISA7A6NL88 538 aa14.1□□□□□ -0.15
CLK3-213ENST00000563842 KCNJ18B7U540 433 aa14.1□□□□□ -0.15
CLK3-213ENST00000563842 H0Y858 1186 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms