RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 NGRNQ9NPE2 291 aaKnown RBP22.29■■□□□ 1.16
CLN3-209ENST00000561689 DMAP1Q9NPF5 467 aaPredicted RBP22.29■■□□□ 1.16
CLN3-209ENST00000561689 USP18Q9UMW8 372 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 TARSL2A2RTX5 802 aaKnown RBP22.28■■□□□ 1.16
CLN3-209ENST00000561689 FSCN2O14926 492 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 RAD51CO43502 376 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 PCK1P35558 622 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 MRPL58Q14197 206 aaKnown RBP22.28■■□□□ 1.16
CLN3-209ENST00000561689 ODF2Q5BJF6 829 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 RAB41Q5JT25 222 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 RTP2Q5QGT7 225 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 C4orf50Q6ZRC1 276 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 POLNQ7Z5Q5 900 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 PRELID2Q8N945 189 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 SLITRK1Q96PX8 696 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 PEBP4Q96S96 227 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 UBXN6Q9BZV1 441 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 ABI2Q9NYB9 513 aaPredicted RBP22.28■■□□□ 1.16
CLN3-209ENST00000561689 AMACRQ9UHK6 382 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 RAB21Q9UL25 225 aa22.28■■□□□ 1.16
CLN3-209ENST00000561689 LRRD1A4D1F6 860 aa22.27■■□□□ 1.16
CLN3-209ENST00000561689 HSF2BPO75031 334 aa22.27■■□□□ 1.16
CLN3-209ENST00000561689 TRUB2O95900 331 aaKnown RBP22.27■■□□□ 1.16
CLN3-209ENST00000561689 KRT7P08729 469 aa22.27■■□□□ 1.16
CLN3-209ENST00000561689 USP17L7P0C7H9 530 aa22.27■■□□□ 1.16
CLN3-209ENST00000561689 SIX1Q15475 284 aaPredicted RBP22.27■■□□□ 1.16
CLN3-209ENST00000561689 GLE1Q53GS7 698 aaKnown RBP22.27■■□□□ 1.16
CLN3-209ENST00000561689 MFSD7Q6UXD7 560 aa22.27■■□□□ 1.16
CLN3-209ENST00000561689 DCP1BQ8IZD4 617 aaKnown RBP22.27■■□□□ 1.16
CLN3-209ENST00000561689 RBM41Q96IZ5 413 aaKnown RBP22.27■■□□□ 1.16
CLN3-209ENST00000561689 ADAM33Q9BZ11 813 aa22.27■■□□□ 1.16
CLN3-209ENST00000561689 OSBPL8Q9BZF1 889 aa22.27■■□□□ 1.16
CLN3-209ENST00000561689 DDX56Q9NY93 547 aaKnown RBP22.27■■□□□ 1.16
CLN3-209ENST00000561689 MTUS1Q9ULD2 1270 aa22.27■■□□□ 1.16
CLN3-209ENST00000561689 KRT10P13645 584 aa22.27■■□□□ 1.15
CLN3-209ENST00000561689 CLCN6P51797 869 aa22.27■■□□□ 1.15
CLN3-209ENST00000561689 ARPP19P56211 112 aa22.27■■□□□ 1.15
CLN3-209ENST00000561689 YWHAZP63104 245 aaKnown RBP22.27■■□□□ 1.15
CLN3-209ENST00000561689 ELAVL2Q12926 359 aaKnown RBP22.27■■□□□ 1.15
CLN3-209ENST00000561689 SPOUT1Q5T280 376 aaKnown RBP22.27■■□□□ 1.15
CLN3-209ENST00000561689 ZNF280DQ6N043 979 aa22.27■■□□□ 1.15
CLN3-209ENST00000561689 SCYL2Q6P3W7 929 aa22.27■■□□□ 1.15
CLN3-209ENST00000561689 HFE2Q6ZVN8 426 aa22.27■■□□□ 1.15
CLN3-209ENST00000561689 ARCQ7LC44 396 aa22.27■■□□□ 1.15
CLN3-209ENST00000561689 DEFB106AQ8N104 65 aa22.27■■□□□ 1.15
CLN3-209ENST00000561689 PGLYRP2Q96PD5 576 aa22.27■■□□□ 1.15
CLN3-209ENST00000561689 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.27■■□□□ 1.15
CLN3-209ENST00000561689 GLI1P08151 1106 aa22.26■■□□□ 1.15
CLN3-209ENST00000561689 GRIK1P39086 918 aa22.26■■□□□ 1.15
CLN3-209ENST00000561689 KAZNQ674X7 775 aa22.26■■□□□ 1.15
CLN3-209ENST00000561689 HSPH1Q92598 858 aa22.26■■□□□ 1.15
CLN3-209ENST00000561689 ZNF689Q96CS4 500 aaPredicted RBP22.26■■□□□ 1.15
CLN3-209ENST00000561689 CNGB3Q9NQW8 809 aa22.26■■□□□ 1.15
CLN3-209ENST00000561689 ARGLU1Q9NWB6 273 aaPredicted RBP22.26■■□□□ 1.15
CLN3-209ENST00000561689 STIM2Q9P246 746 aa22.26■■□□□ 1.15
CLN3-209ENST00000561689 FNDC1Q4ZHG4 1894 aaPredicted RBP22.26■■□□□ 1.15
CLN3-209ENST00000561689 YJEFN3A6XGL0 299 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 E7ENQ6 273 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 FBXO21O94952 628 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 MATKP42679 507 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 DAOAP59103 153 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 DCAF6Q58WW2 860 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 WDR93Q6P2C0 686 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 RSPO2Q6UXX9 243 aaPredicted RBP22.25■■□□□ 1.15
CLN3-209ENST00000561689 SPOCD1Q6ZMY3 1216 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 MAGOHBQ96A72 148 aaKnown RBP22.25■■□□□ 1.15
CLN3-209ENST00000561689 TTPALQ9BTX7 342 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 DDX23Q9BUQ8 820 aaKnown RBP22.25■■□□□ 1.15
CLN3-209ENST00000561689 IL23AQ9NPF7 189 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 ZSCAN5CA6NGD5 496 aaPredicted RBP22.25■■□□□ 1.15
CLN3-209ENST00000561689 PRPSAP2O60256 369 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 HEXIM1O94992 359 aaKnown RBP22.25■■□□□ 1.15
CLN3-209ENST00000561689 ZBED1O96006 694 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 DESP17661 470 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 PTPN9P43378 593 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 ATXN1P54253 815 aaKnown RBP22.25■■□□□ 1.15
CLN3-209ENST00000561689 HDAC4P56524 1084 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 ADCY2Q08462 1091 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 CYP4V2Q6ZWL3 525 aaPredicted RBP22.25■■□□□ 1.15
CLN3-209ENST00000561689 C16orf59Q7L2K0 433 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 C11orf84Q9BUA3 381 aaPredicted RBP22.25■■□□□ 1.15
CLN3-209ENST00000561689 SLITRK6Q9H5Y7 841 aa22.25■■□□□ 1.15
CLN3-209ENST00000561689 LAMA2P24043 3122 aaKnown RBP22.24■■□□□ 1.15
CLN3-209ENST00000561689 OR6C75A6NL08 312 aa22.24■■□□□ 1.15
CLN3-209ENST00000561689 C3orf70A6NLC5 250 aaPredicted RBP22.24■■□□□ 1.15
CLN3-209ENST00000561689 EFCAB14O75071 495 aa22.24■■□□□ 1.15
CLN3-209ENST00000561689 PHF2O75151 1096 aa22.24■■□□□ 1.15
CLN3-209ENST00000561689 CD48P09326 243 aa22.24■■□□□ 1.15
CLN3-209ENST00000561689 CETN2P41208 172 aa22.24■■□□□ 1.15
CLN3-209ENST00000561689 KLF1Q13351 362 aaPredicted RBP22.24■■□□□ 1.15
CLN3-209ENST00000561689 BTG3Q14201 252 aaPredicted RBP22.24■■□□□ 1.15
CLN3-209ENST00000561689 NFE2Q16621 373 aaPredicted RBP22.24■■□□□ 1.15
CLN3-209ENST00000561689 PRSS55Q6UWB4 352 aaPredicted RBP22.24■■□□□ 1.15
CLN3-209ENST00000561689 SCN4BQ8IWT1 228 aa22.24■■□□□ 1.15
CLN3-209ENST00000561689 SCAMP5Q8TAC9 235 aa22.24■■□□□ 1.15
CLN3-209ENST00000561689 C1orf54Q8WWF1 131 aa22.24■■□□□ 1.15
CLN3-209ENST00000561689 IGSF21Q96ID5 467 aa22.24■■□□□ 1.15
CLN3-209ENST00000561689 TBCBQ99426 244 aa22.24■■□□□ 1.15
CLN3-209ENST00000561689 RC3H2Q9HBD1 1191 aaKnown RBP22.24■■□□□ 1.15
CLN3-209ENST00000561689 CALCOCO1Q9P1Z2 691 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms