RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 PTPN22Q9Y2R2 807 aa6.78□□□□□ -1.32
LRRC28-220ENST00000561253 PCDHA1Q9Y5I3 950 aa6.78□□□□□ -1.32
LRRC28-220ENST00000561253 ABCB11O95342 1321 aa6.77□□□□□ -1.32
LRRC28-220ENST00000561253 MGAMO43451 1857 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 ESYT2A0FGR8 921 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 MROH6A6NGR9 719 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 PGK2P07205 417 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 FCER1AP12319 257 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 ALAS1P13196 640 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 SCG2P13521 617 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 C5AR1P21730 350 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 MCM2P49736 904 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 RPS6P62753 249 aaKnown RBP6.77□□□□□ -1.33
LRRC28-220ENST00000561253 CD69Q07108 199 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 ADAM15Q13444 863 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 BAATQ14032 418 aaPredicted RBP6.77□□□□□ -1.33
LRRC28-220ENST00000561253 ADRM1Q16186 407 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 CCL14Q16627 93 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 USH1GQ495M9 461 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 MAMDC4Q6UXC1 1216 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 NOL8Q76FK4 1167 aaKnown RBP6.77□□□□□ -1.33
LRRC28-220ENST00000561253 MIER2Q8N344 545 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 GLB1L3Q8NCI6 653 aaPredicted RBP6.77□□□□□ -1.33
LRRC28-220ENST00000561253 PPP1R14CQ8TAE6 165 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 CRYGNQ8WXF5 182 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 PIBF1Q8WXW3 757 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 ZSCAN31Q96LW9 406 aaPredicted RBP6.77□□□□□ -1.33
LRRC28-220ENST00000561253 UIMC1Q96RL1 719 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 LLPHQ9BRT6 129 aaKnown RBP6.77□□□□□ -1.33
LRRC28-220ENST00000561253 CSRNP2Q9H175 543 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 ISY1Q9ULR0 285 aaKnown RBP6.77□□□□□ -1.33
LRRC28-220ENST00000561253 TRIM17Q9Y577 477 aa6.77□□□□□ -1.33
LRRC28-220ENST00000561253 DDX49Q9Y6V7 483 aaKnown RBP6.77□□□□□ -1.33
LRRC28-220ENST00000561253 PFASO15067 1338 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 RPTORQ8N122 1335 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 hCG_1984214I3L0E3 225 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 RFPL1O75677 317 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 DEXIO95424 95 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 SNAI1O95863 264 aaPredicted RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 ZNF888P0CJ79 500 aaPredicted RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 RGS2P41220 211 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 SLC16A1P53985 500 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 GJA9P57773 515 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 MALLQ13021 153 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 KIF22Q14807 665 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 PKN2Q16513 984 aaKnown RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 ZNF568Q3ZCX4 644 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 AGBL4Q5VU57 503 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 FBXO46Q6PJ61 603 aaPredicted RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 FAM180AQ6UWF9 173 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 WDR75Q8IWA0 830 aaKnown RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 CCDC83Q8IWF9 413 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 LRRC56Q8IYG6 542 aaPredicted RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 UNC5BQ8IZJ1 945 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 SAMD3Q8N6K7 520 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 ZNF713Q8N859 430 aaPredicted RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 TRPV1Q8NER1 839 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 GCDHQ92947 438 aaPredicted RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 ADI1Q9BV57 179 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 SLC26A6Q9BXS9 759 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 ZMYND12Q9H0C1 365 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 RIC8AQ9NPQ8 531 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 GJB4Q9NTQ9 266 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 MAP3K20Q9NYL2 800 aaKnown RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 TUBD1Q9UJT1 453 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 PNMA8BQ9ULN7 279 aaPredicted RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 NAP1L2Q9ULW6 460 aaPredicted RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 DNM3Q9UQ16 869 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 MRPL11Q9Y3B7 192 aaKnown RBP6.76□□□□□ -1.33
LRRC28-220ENST00000561253 LAMA3Q16787 3333 aa6.76□□□□□ -1.33
LRRC28-220ENST00000561253 LAMA2P24043 3122 aaKnown RBP6.75□□□□□ -1.33
LRRC28-220ENST00000561253 LOC102724159A0A0B4J2E5 919 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 DHX16O60231 1041 aaKnown RBP6.75□□□□□ -1.33
LRRC28-220ENST00000561253 ZRANB2O95218 330 aaKnown RBP eCLIP6.75□□□□□ -1.33
LRRC28-220ENST00000561253 LY86O95711 162 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 CYBAP13498 195 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 CYP2B6P20813 491 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 HOXD10P28358 340 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 HOXA13P31271 388 aaPredicted RBP6.75□□□□□ -1.33
LRRC28-220ENST00000561253 KCNC1P48547 511 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 ADKP55263 362 aaKnown RBP6.75□□□□□ -1.33
LRRC28-220ENST00000561253 MEF2AQ02078 507 aaPredicted RBP6.75□□□□□ -1.33
LRRC28-220ENST00000561253 TRAF1Q13077 416 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 KCTD2Q14681 263 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 PWP2Q15269 919 aaKnown RBP6.75□□□□□ -1.33
LRRC28-220ENST00000561253 USP17L6PQ6QN14 398 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 RNF207Q6ZRF8 634 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 HEATR3Q7Z4Q2 680 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 KBTBD2Q8IY47 623 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 MYO1HQ8N1T3 1032 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 MSL3Q8N5Y2 521 aaKnown RBP6.75□□□□□ -1.33
LRRC28-220ENST00000561253 IL31RAQ8NI17 732 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 ZSCAN18Q8TBC5 510 aaPredicted RBP6.75□□□□□ -1.33
LRRC28-220ENST00000561253 LPPQ93052 612 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 MBD6Q96DN6 1003 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 ZNF333Q96JL9 665 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 TAAR1Q96RJ0 339 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 OR10A2Q9H208 303 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 SH3GLB2Q9NR46 395 aa6.75□□□□□ -1.33
LRRC28-220ENST00000561253 VPS54Q9P1Q0 977 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms