RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 APPL2Q8NEU8 664 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 SHKBP1Q8TBC3 707 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 BAP1Q92560 729 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 SUSD3Q96L08 255 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 ZNF830Q96NB3 372 aaPredicted RBP12.49□□□□□ -0.41
LDLR-212ENST00000560467 SLITRK6Q9H5Y7 841 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 ASAH2Q9NR71 780 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 RBM12Q9NTZ6 932 aaKnown RBP12.49□□□□□ -0.41
LDLR-212ENST00000560467 SEPT11Q9NVA2 429 aaKnown RBP12.49□□□□□ -0.41
LDLR-212ENST00000560467 AFF4Q9UHB7 1163 aaKnown RBP12.49□□□□□ -0.41
LDLR-212ENST00000560467 SIX4Q9UIU6 781 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 DSEQ9UL01 958 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 KIAA1257Q9ULG3 409 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 YIPF1Q9Y548 306 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 SNX9Q9Y5X1 595 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 KMT2BQ9UMN6 2715 aaPredicted RBP12.49□□□□□ -0.41
LDLR-212ENST00000560467 MAP1BP46821 2468 aaKnown RBP12.49□□□□□ -0.41
LDLR-212ENST00000560467 SSU72P8A0A1W2PR75 194 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 ANO9A1A5B4 782 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 SLC38A8A6NNN8 435 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 HEPACAM2A8MVW5 462 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 CHURC1-FNTBB4DL54 471 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 FOXN3O00409 490 aaPredicted RBP12.48□□□□□ -0.41
LDLR-212ENST00000560467 PIRO00625 290 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 ZNF263O14978 683 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 MED7O43513 233 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 VNN2O95498 520 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 OR4Q2P0C623 313 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 CHRNB1P11230 501 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 CPB1P15086 417 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 CD58P19256 250 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 HOXC13P31276 330 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 FNTBP49356 437 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 EPHA5P54756 1037 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 JAM2P57087 298 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 APBA1Q02410 837 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 GOLGA8FQ08AF8 430 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 GOLGA8DPQ0D2H9 430 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 MEA1Q16626 185 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 PPP1R2P3Q6NXS1 205 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 TMEM270Q6UE05 265 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 MAMSTRQ6ZN01 415 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 Q6ZS52 159 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 GPIHBP1Q8IV16 184 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 CELF5Q8N6W0 485 aaKnown RBP12.48□□□□□ -0.41
LDLR-212ENST00000560467 DEPDC1BQ8WUY9 529 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 SHC3Q92529 594 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 ZNF512Q96ME7 567 aaPredicted RBP12.48□□□□□ -0.41
LDLR-212ENST00000560467 IER2Q9BTL4 223 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 NHEJ1Q9H9Q4 299 aaPredicted RBP12.48□□□□□ -0.41
LDLR-212ENST00000560467 TRPV4Q9HBA0 871 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 TRPV5Q9NQA5 729 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 CISHQ9NSE2 258 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 C2orf42Q9NWW7 574 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 PCDHB8Q9UN66 801 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 CEP83Q9Y592 693 aa12.48□□□□□ -0.41
LDLR-212ENST00000560467 TIMM13Q9Y5L4 95 aaPredicted RBP12.48□□□□□ -0.41
LDLR-212ENST00000560467 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.48□□□□□ -0.41
LDLR-212ENST00000560467 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.47□□□□□ -0.41
LDLR-212ENST00000560467 A0A1W2PRU2 124 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 GOLGA6L9A6NEM1 432 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 CYB561D2O14569 222 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 HRO43593 1189 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 RETP07949 1114 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 CCDC175P0C221 793 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 ODC1P11926 461 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 CXCL12P48061 93 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 GUCY2FP51841 1108 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 NRLP54845 237 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 SIM2Q14190 667 aaPredicted RBP12.47□□□□□ -0.41
LDLR-212ENST00000560467 PPP2R5DQ14738 602 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 C10orf76Q5T2E6 689 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 STXBP5Q5T5C0 1151 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 SPOPLQ6IQ16 392 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 SCARA5Q6ZMJ2 495 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 ZSCAN30Q86W11 494 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 ZNF677Q86XU0 584 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 TMC8Q8IU68 726 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 MFSD6LQ8IWD5 586 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 FAM71AQ8IYT1 594 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 THEM5Q8N1Q8 247 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 TMEM86AQ8N2M4 240 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 TOP6BLQ8N6T0 577 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 TTC8Q8TAM2 541 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 NETO1Q8TDF5 533 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 PGLYRP2Q96PD5 576 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 XYLT2Q9H1B5 865 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 CRISPLD1Q9H336 500 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 GDAP2Q9NXN4 497 aa12.47□□□□□ -0.41
LDLR-212ENST00000560467 EPN1Q9Y6I3 576 aaPredicted RBP12.47□□□□□ -0.41
LDLR-212ENST00000560467 ZFHX4Q86UP3 3567 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 COL4A2P08572 1712 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 K7ESF4 209 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 RNF225M0QZC1 329 aaPredicted RBP12.46□□□□□ -0.41
LDLR-212ENST00000560467 SLC30A4O14863 429 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 CYP26A1O43174 497 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 ADRB1P08588 477 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 PAEPP09466 180 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 GNL1P36915 607 aaPredicted RBP12.46□□□□□ -0.41
LDLR-212ENST00000560467 EIF4A3P38919 411 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms