RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 SGK1O00141 431 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 CDX4O14627 284 aaPredicted RBP9.74□□□□□ -0.85
HDDC3-204ENST00000559834 CLIC2O15247 247 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 TGFB1I1O43294 461 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 STX6O43752 255 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 CUTAO60888 179 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 PROS1P07225 676 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 TRIM21P19474 475 aaKnown RBP9.74□□□□□ -0.85
HDDC3-204ENST00000559834 BCKDHBP21953 392 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 HOXD13P35453 343 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 P2RY2P41231 377 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 TUBP50607 506 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 CYP2J2P51589 502 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 MYL6P60660 151 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 E2F4Q16254 413 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 UAP1L1Q3KQV9 507 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 LY6G5CQ5SRR4 150 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 SNX30Q5VWJ9 437 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 TMEM92Q6UXU6 159 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 UNC13DQ70J99 1090 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 EPM2AIP1Q7L775 607 aaPredicted RBP9.74□□□□□ -0.85
HDDC3-204ENST00000559834 SYT12Q8IV01 421 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 NELFCDQ8IXH7 590 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 GLIS3Q8NEA6 775 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 GOLGA5Q8TBA6 731 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 RLN3Q8WXF3 142 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 MED10Q9BTT4 135 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 B3GNT5Q9BYG0 378 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 ZNF518BQ9C0D4 1074 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 NACA2Q9H009 215 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 SLC32A1Q9H598 525 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 MAGEF1Q9HAY2 307 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 DEC1Q9P2X7 70 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 UBE4BO95155 1302 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 OBSL1O75147 1896 aa9.74□□□□□ -0.85
HDDC3-204ENST00000559834 PVALEFA0A1B0GWK0 134 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 CLDN5O00501 218 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 GIPC1O14908 333 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 AP5Z1O43299 807 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 COCHO43405 550 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 EXOC3O60645 756 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 CLSTN1O94985 981 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 PDIA4P13667 645 aaKnown RBP9.73□□□□□ -0.85
HDDC3-204ENST00000559834 P4HA1P13674 534 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 RDXP35241 583 aaKnown RBP9.73□□□□□ -0.85
HDDC3-204ENST00000559834 KIR2DL1P43626 348 aaPredicted RBP9.73□□□□□ -0.85
HDDC3-204ENST00000559834 ZNF252P-AS1Q0IIN9 211 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 FOXC1Q12948 553 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 BIRC3Q13489 604 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 KNOP1Q1ED39 458 aaKnown RBP9.73□□□□□ -0.85
HDDC3-204ENST00000559834 ANO4Q32M45 955 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 TRIM61Q5EBN2 209 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 ZNF667Q5HYK9 610 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 EMC10Q5UCC4 262 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 SDE2Q6IQ49 451 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 SLC36A4Q6YBV0 504 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 C12orf56Q8IXR9 622 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 CEP76Q8TAP6 659 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 SCFD1Q8WVM8 642 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 HMGB4Q8WW32 186 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 ZNF516Q92618 1163 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 KCNK16Q96T55 309 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 DUSP9Q99956 384 aaKnown RBP9.73□□□□□ -0.85
HDDC3-204ENST00000559834 DPEP3Q9H4B8 488 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 FBXO44Q9H4M3 255 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 VRTNQ9H8Y1 702 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 DMAP1Q9NPF5 467 aaPredicted RBP9.73□□□□□ -0.85
HDDC3-204ENST00000559834 SPHK2Q9NRA0 654 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 IL37Q9NZH6 218 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 TFIP11Q9UBB9 837 aaKnown RBP9.73□□□□□ -0.85
HDDC3-204ENST00000559834 DNAH14Q0VDD8 3507 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 ANAPC1Q9H1A4 1944 aa9.73□□□□□ -0.85
HDDC3-204ENST00000559834 EML5Q05BV3 1969 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 THADAQ6YHU6 1953 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 MAP1BP46821 2468 aaKnown RBP9.72□□□□□ -0.85
HDDC3-204ENST00000559834 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 TCRBV21S2A2A0A5A6 115 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 PATE3B3GLJ2 98 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 SCAMP3O14828 347 aaKnown RBP9.72□□□□□ -0.85
HDDC3-204ENST00000559834 HOXC11O43248 304 aaPredicted RBP9.72□□□□□ -0.85
HDDC3-204ENST00000559834 YEATS4O95619 227 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 RPN1P04843 607 aaKnown RBP9.72□□□□□ -0.85
HDDC3-204ENST00000559834 HOXD12P35452 270 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 ATXN3P54252 364 aaPredicted RBP9.72□□□□□ -0.85
HDDC3-204ENST00000559834 CACNA2D1P54289 1103 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 KDSRQ06136 332 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 GOLGA8FQ08AF8 430 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 GOLGA8DPQ0D2H9 430 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 SGSM1Q2NKQ1 1148 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 ZNF699Q32M78 642 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 LYSMD4Q5XG99 296 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 SLC23A3Q6PIS1 610 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 RABEPKQ7Z6M1 372 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 C12orf40Q86WS4 652 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 TMEFF1Q8IYR6 380 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 ZNF513Q8N8E2 541 aaPredicted RBP9.72□□□□□ -0.85
HDDC3-204ENST00000559834 NAT16Q8N8M0 369 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 SCAMP5Q8TAC9 235 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 SMARCD1Q96GM5 515 aa9.72□□□□□ -0.85
HDDC3-204ENST00000559834 XPO6Q96QU8 1125 aaKnown RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms