RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 FER1L4A9Z1Z3 1794 aa5.62□□□□□ -1.51
VPS13C-208ENST00000559119 M0R3H8 397 aa5.61□□□□□ -1.51
VPS13C-208ENST00000559119 ABLIM3O94929 683 aa5.61□□□□□ -1.51
VPS13C-208ENST00000559119 OAZ2O95190 189 aa5.61□□□□□ -1.51
VPS13C-208ENST00000559119 ARFIP2P53365 341 aa5.61□□□□□ -1.51
VPS13C-208ENST00000559119 ID2Q02363 134 aa5.61□□□□□ -1.51
VPS13C-208ENST00000559119 MIDNQ504T8 468 aa5.61□□□□□ -1.51
VPS13C-208ENST00000559119 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-208ENST00000559119 ADAMTS15Q8TE58 950 aa5.61□□□□□ -1.51
VPS13C-208ENST00000559119 HOOK2Q96ED9 719 aa5.61□□□□□ -1.51
VPS13C-208ENST00000559119 HS6ST2Q96MM7 605 aa5.61□□□□□ -1.51
VPS13C-208ENST00000559119 SLC12A5Q9H2X9 1139 aa5.61□□□□□ -1.51
VPS13C-208ENST00000559119 POT1Q9NUX5 634 aa5.61□□□□□ -1.51
VPS13C-208ENST00000559119 ZMYM2Q9UBW7 1377 aa5.6□□□□□ -1.51
VPS13C-208ENST00000559119 H3BML4 177 aa5.6□□□□□ -1.51
VPS13C-208ENST00000559119 KITP10721 976 aa5.6□□□□□ -1.51
VPS13C-208ENST00000559119 CYP19A1P11511 503 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-208ENST00000559119 EPHA3P29320 983 aa5.6□□□□□ -1.51
VPS13C-208ENST00000559119 LARS2Q15031 903 aaKnown RBP5.6□□□□□ -1.51
VPS13C-208ENST00000559119 AWAT1Q58HT5 328 aa5.6□□□□□ -1.51
VPS13C-208ENST00000559119 DCDC5Q6ZRR9 648 aa5.6□□□□□ -1.51
VPS13C-208ENST00000559119 C16orf71Q8IYS4 520 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-208ENST00000559119 DNAJB14Q8TBM8 379 aa5.6□□□□□ -1.51
VPS13C-208ENST00000559119 NT5C1BQ96P26 610 aa5.6□□□□□ -1.51
VPS13C-208ENST00000559119 TMEM184CQ9NVA4 438 aa5.6□□□□□ -1.51
VPS13C-208ENST00000559119 WWOXQ9NZC7 414 aa5.6□□□□□ -1.51
VPS13C-208ENST00000559119 MAFFQ9ULX9 164 aa5.6□□□□□ -1.51
VPS13C-208ENST00000559119 CCDC187A0A096LP49 1063 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 CD8B2A6NJW9 211 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 TMEM233B4DJY2 109 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 H3BNX3 289 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 RGS10O43665 173 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 UBXN7O94888 489 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 APEHP13798 732 aaKnown RBP5.59□□□□□ -1.51
VPS13C-208ENST00000559119 CREB1P16220 341 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 HSPA6P17066 643 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 DIO1P49895 249 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 TMTC4Q5T4D3 741 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 KIAA1161Q6NSJ0 714 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 VSTM1Q6UX27 236 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 RANBP10Q6VN20 620 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 LIX1LQ8IVB5 337 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 MAFAQ8NHW3 353 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-208ENST00000559119 VN1R3Q9BXE9 311 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 DPH1Q9BZG8 443 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 MGAT4CQ9UBM8 478 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 PAXBP1Q9Y5B6 917 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 SQORQ9Y6N5 450 aa5.59□□□□□ -1.51
VPS13C-208ENST00000559119 TMPRSS11DO60235 418 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 MARCH6O60337 910 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 SRGAP2O75044 1071 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 RASAL1O95294 804 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 INSCQ1MX18 579 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 CACHD1Q5VU97 1274 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 DEF8Q6ZN54 512 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 ANKRD13BQ86YJ7 626 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 MARK4Q96L34 752 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 PPP1R9BQ96SB3 815 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 ZMAT3Q9HA38 289 aaKnown RBP5.58□□□□□ -1.52
VPS13C-208ENST00000559119 NMRK2Q9NPI5 230 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 GABBR1Q9UBS5 961 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 CDY1Q9Y6F8 540 aa5.58□□□□□ -1.52
VPS13C-208ENST00000559119 PHGDHO43175 533 aaKnown RBP5.57□□□□□ -1.52
VPS13C-208ENST00000559119 TLR2O60603 784 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 UQCRC1P31930 480 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 ME1P48163 572 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 RPS13P62277 151 aaKnown RBP5.57□□□□□ -1.52
VPS13C-208ENST00000559119 KCNB1Q14721 858 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 CC2D1BQ5T0F9 858 aaKnown RBP5.57□□□□□ -1.52
VPS13C-208ENST00000559119 DCAF12L1Q5VU92 463 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 PIM3Q86V86 326 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 LINC01465Q8N7H1 131 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 NGDNQ8NEJ9 315 aaKnown RBP5.57□□□□□ -1.52
VPS13C-208ENST00000559119 KRTAP2-2Q9BYT5 123 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 TRIM5Q9C035 493 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 ZNF518BQ9C0D4 1074 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 SMURF2Q9HAU4 748 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 XPNPEP3Q9NQH7 507 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 HEY2Q9UBP5 337 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 PNMA8BQ9ULN7 279 aaPredicted RBP5.57□□□□□ -1.52
VPS13C-208ENST00000559119 LRP12Q9Y561 859 aa5.57□□□□□ -1.52
VPS13C-208ENST00000559119 SPRY2O43597 315 aa5.56□□□□□ -1.52
VPS13C-208ENST00000559119 CRYABP02511 175 aaKnown RBP5.56□□□□□ -1.52
VPS13C-208ENST00000559119 ALPLP05186 524 aa5.56□□□□□ -1.52
VPS13C-208ENST00000559119 TIRAPP58753 221 aa5.56□□□□□ -1.52
VPS13C-208ENST00000559119 SEC23BQ15437 767 aa5.56□□□□□ -1.52
VPS13C-208ENST00000559119 LEXMQ3ZCV2 418 aa5.56□□□□□ -1.52
VPS13C-208ENST00000559119 ZDHHC24Q6UX98 284 aa5.56□□□□□ -1.52
VPS13C-208ENST00000559119 MEPCEQ7L2J0 689 aaKnown RBP5.56□□□□□ -1.52
VPS13C-208ENST00000559119 PPP1R35Q8TAP8 253 aa5.56□□□□□ -1.52
VPS13C-208ENST00000559119 SPSB4Q96A44 273 aa5.56□□□□□ -1.52
VPS13C-208ENST00000559119 CTHRC1Q96CG8 243 aa5.56□□□□□ -1.52
VPS13C-208ENST00000559119 LRGUKQ96M69 825 aa5.56□□□□□ -1.52
VPS13C-208ENST00000559119 A1CFQ9NQ94 594 aaKnown RBP5.56□□□□□ -1.52
VPS13C-208ENST00000559119 HS3ST3B1Q9Y662 390 aa5.56□□□□□ -1.52
VPS13C-208ENST00000559119 PSG1P11464 419 aa5.55□□□□□ -1.52
VPS13C-208ENST00000559119 EN2P19622 333 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-208ENST00000559119 SLC7A1P30825 629 aa5.55□□□□□ -1.52
VPS13C-208ENST00000559119 SRSF1Q07955 248 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS13C-208ENST00000559119 PIP4P1Q86T03 277 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms