RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ZDHHC14Q8IZN3 488 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 RSPH1Q8WYR4 309 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 KCTD13Q8WZ19 329 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 RNF25Q96BH1 459 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-229ENST00000557348 ARL8AQ96BM9 186 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 SENP8Q96LD8 212 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 ZFP42Q96MM3 310 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 GDAP1L1Q96MZ0 367 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 PRDM16Q9HAZ2 1276 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 SLC40A1Q9NP59 571 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 STARD7Q9NQZ5 370 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 ZDHHC18Q9NUE0 388 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 PHF24Q9UPV7 400 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 PTCH2Q9Y6C5 1203 aa13.23□□□□□ -0.29
SHMT2-229ENST00000557348 TRIP12Q14669 1992 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-229ENST00000557348 PCNTO95613 3336 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 TRAPPC3O43617 180 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 FBXO21O94952 628 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 TRUB2O95900 331 aaKnown RBP13.22□□□□□ -0.29
SHMT2-229ENST00000557348 FAM153BP0C7A2 387 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 ATF2P15336 505 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 PTPN1P18031 435 aaKnown RBP13.22□□□□□ -0.29
SHMT2-229ENST00000557348 TUSC3Q13454 348 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 FAM153CQ494X1 144 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 MFSD7Q6UXD7 560 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 DSTYKQ6XUX3 929 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 BBS12Q6ZW61 710 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 FUKQ8N0W3 1084 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 TMEM130Q8N3G9 435 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 GSTCDQ8NEC7 633 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 CMASQ8NFW8 434 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-229ENST00000557348 C1orf54Q8WWF1 131 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 RXFP2Q8WXD0 754 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 NKD2Q969F2 451 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-229ENST00000557348 RSRC1Q96IZ7 334 aaKnown RBP13.22□□□□□ -0.29
SHMT2-229ENST00000557348 ADAM2Q99965 735 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 HINFPQ9BQA5 517 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 DUSP16Q9BY84 665 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 GOLGA2P5Q9HBQ8 144 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 ASIC3Q9UHC3 531 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 FAM153AQ9UHL3 310 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 CDH9Q9ULB4 789 aa13.22□□□□□ -0.29
SHMT2-229ENST00000557348 MDM4O15151 490 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 LIASO43766 372 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 MGRN1O60291 552 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 ITGAVP06756 1048 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 FGFR1P11362 822 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 NPR3P17342 541 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 KDELR1P24390 212 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 MIPP30301 263 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 RPL21P46778 160 aaKnown RBP13.21□□□□□ -0.29
SHMT2-229ENST00000557348 SCNN1GP51170 649 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 DHX9Q08211 1270 aaKnown RBP13.21□□□□□ -0.29
SHMT2-229ENST00000557348 BFSP2Q13515 415 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 BYSLQ13895 437 aaKnown RBP13.21□□□□□ -0.29
SHMT2-229ENST00000557348 MAPRE1Q15691 268 aaKnown RBP13.21□□□□□ -0.29
SHMT2-229ENST00000557348 UPP1Q16831 310 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 ZNF618Q5T7W0 954 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 GKAP1Q5VSY0 366 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-229ENST00000557348 CYB5D1Q6P9G0 228 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 CACNA2D3Q8IZS8 1091 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 EMC1Q8N766 993 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 KCTD6Q8NC69 237 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 TSEN2Q8NCE0 465 aaKnown RBP13.21□□□□□ -0.29
SHMT2-229ENST00000557348 SLC2A14Q8TDB8 520 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 ART4Q93070 314 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 HEMGNQ9BXL5 484 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 TRIM31Q9BZY9 425 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 RGS18Q9NS28 235 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 CHST7Q9NS84 486 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 GRHL1Q9NZI5 618 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 KANSL3Q9P2N6 904 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 TJP2Q9UDY2 1190 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 SNX24Q9Y343 169 aa13.21□□□□□ -0.29
SHMT2-229ENST00000557348 A0A1W2PQ45 241 aaPredicted RBP13.21□□□□□ -0.3
SHMT2-229ENST00000557348 A0A1W2PQY0 241 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 SMAPO00193 183 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 LIN7AO14910 233 aaPredicted RBP13.21□□□□□ -0.3
SHMT2-229ENST00000557348 PAPSS1O43252 624 aaPredicted RBP13.21□□□□□ -0.3
SHMT2-229ENST00000557348 ZNF189O75820 626 aaPredicted RBP13.21□□□□□ -0.3
SHMT2-229ENST00000557348 CYP11A1P05108 521 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 PDGFRBP09619 1106 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 FAM200BP0CF97 657 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 CKBP12277 381 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 CCDC130P13994 396 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 LMO2P25791 158 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 ADORA2BP29275 332 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 RGS7P49802 495 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 PLTPP55058 493 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 VCPP55072 806 aaKnown RBP13.21□□□□□ -0.3
SHMT2-229ENST00000557348 RNF187Q5TA31 235 aaPredicted RBP13.21□□□□□ -0.3
SHMT2-229ENST00000557348 WSCD1Q658N2 575 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 LHX8Q68G74 356 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 GLB1LQ6UWU2 654 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 SLC24A5Q71RS6 500 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 DDX42Q86XP3 938 aaKnown RBP eCLIP13.21□□□□□ -0.3
SHMT2-229ENST00000557348 ECHDC2Q86YB7 292 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 ANKS4BQ8N8V4 417 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 URGCPQ8TCY9 931 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 BEGAINQ9BUH8 593 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms