RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 DPP3Q9NY33 737 aa9.97□□□□□ -0.81
SYNE2-224ENST00000557024 CALCOCO1Q9P1Z2 691 aa9.97□□□□□ -0.81
SYNE2-224ENST00000557024 CPSF3Q9UKF6 684 aaKnown RBP9.97□□□□□ -0.81
SYNE2-224ENST00000557024 DERAQ9Y315 318 aa9.97□□□□□ -0.81
SYNE2-224ENST00000557024 TSC2P49815 1807 aa9.97□□□□□ -0.81
SYNE2-224ENST00000557024 CITO14578 2027 aa9.97□□□□□ -0.81
SYNE2-224ENST00000557024 KIAA1549LQ6ZVL6 1849 aa9.96□□□□□ -0.81
SYNE2-224ENST00000557024 A0A0B4J269 797 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 IGHV1OR15-9A0A0B4J2B8 117 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 A0A1W2PQD8 194 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 KPNA7A9QM74 516 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 BHMG1C9JSJ3 638 aaPredicted RBP9.96□□□□□ -0.82
SYNE2-224ENST00000557024 CBFA2T3O75081 653 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 GRIA2P42262 883 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 WASP42768 502 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 ACOT2P49753 483 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 NCKAP1LP55160 1127 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 GRIK2Q13002 908 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 PDIA5Q14554 519 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 SV2CQ496J9 727 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 RILPL1Q5EBL4 403 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 LAPTM4BQ86VI4 370 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 HOMEZQ8IX15 550 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 RGL4Q8IZJ4 473 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 ADGRG2Q8IZP9 1017 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 PDCL2Q8N4E4 241 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 LEO1Q8WVC0 666 aaPredicted RBP9.96□□□□□ -0.82
SYNE2-224ENST00000557024 ZFRQ96KR1 1074 aaKnown RBP9.96□□□□□ -0.82
SYNE2-224ENST00000557024 UBL7Q96S82 380 aaPredicted RBP9.96□□□□□ -0.82
SYNE2-224ENST00000557024 RAB34Q9BZG1 259 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 CCSER1Q9C0I3 900 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 SMPD4Q9NXE4 827 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 DDX43Q9NXZ2 648 aaKnown RBP9.96□□□□□ -0.82
SYNE2-224ENST00000557024 DKK4Q9UBT3 224 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 KCNG1Q9UIX4 513 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 GTF3C4Q9UKN8 822 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 PCOLCE2Q9UKZ9 415 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 CYP8B1Q9UNU6 501 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 ZDHHC9Q9Y397 364 aa9.96□□□□□ -0.82
SYNE2-224ENST00000557024 CFAP46Q8IYW2 2715 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 A0A087WV48 116 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 TRABD2BA6NFA1 517 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 H0YCG3 227 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 ADH1CP00326 375 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 PIGRP01833 764 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 ADH5P11766 374 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 PLA2G2AP14555 144 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 HOXB2P14652 356 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 EIF2DP41214 584 aaKnown RBP9.95□□□□□ -0.82
SYNE2-224ENST00000557024 TNFRSF4P43489 277 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 PDE6CP51160 858 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 KRT85P78386 507 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 IL17AQ16552 155 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 INTS6LQ5JSJ4 861 aaKnown RBP9.95□□□□□ -0.82
SYNE2-224ENST00000557024 SLC39A4Q6P5W5 647 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 RHBDF2Q6PJF5 856 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 ADGRD1Q6QNK2 874 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 TMPRSS7Q7RTY8 843 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 GLRX5Q86SX6 157 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 SPATA2LQ8IUW3 424 aaPredicted RBP9.95□□□□□ -0.82
SYNE2-224ENST00000557024 PIP4K2CQ8TBX8 421 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 SETD7Q8WTS6 366 aaKnown RBP9.95□□□□□ -0.82
SYNE2-224ENST00000557024 GBP4Q96PP9 640 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 PLIN2Q99541 437 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 PKMYT1Q99640 499 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 MMTAG2Q9BU76 263 aaKnown RBP9.95□□□□□ -0.82
SYNE2-224ENST00000557024 ASB7Q9H672 318 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 CFAP97Q9P2B7 532 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 LARSQ9P2J5 1176 aaKnown RBP9.95□□□□□ -0.82
SYNE2-224ENST00000557024 CFAP45Q9UL16 551 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 L1RE1Q9UN81 338 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 C2CD2Q9Y426 696 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 MYO16Q9Y6X6 1858 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 PCDH15Q96QU1 1955 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 ACACAQ13085 2346 aa9.95□□□□□ -0.82
SYNE2-224ENST00000557024 TNRC6BQ9UPQ9 1833 aaKnown RBP9.94□□□□□ -0.82
SYNE2-224ENST00000557024 A0A0A0MRY4 1105 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 FAM149AA5PLN7 773 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 TBC1D3BA6NDS4 549 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 GOLGA8CPA6NN73 597 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 TISP43B9A030 160 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 GOLGA6L22H0YM25 854 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 K7ENM7 598 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 SLC9A3R1O14745 358 aaPredicted RBP9.94□□□□□ -0.82
SYNE2-224ENST00000557024 HCRTO43612 131 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 ATXN1LP0C7T5 689 aaKnown RBP9.94□□□□□ -0.82
SYNE2-224ENST00000557024 GNSP15586 552 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 MAOBP27338 520 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 TRAPPC10P48553 1259 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 SLC12A3P55017 1021 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 CEBPZQ03701 1054 aaKnown RBP9.94□□□□□ -0.82
SYNE2-224ENST00000557024 DNM1Q05193 864 aaKnown RBP9.94□□□□□ -0.82
SYNE2-224ENST00000557024 STK38Q15208 465 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 SF3A1Q15459 793 aaKnown RBP9.94□□□□□ -0.82
SYNE2-224ENST00000557024 SYCP2LQ5T4T6 812 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 ATL3Q6DD88 541 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 FAM173BQ6P4H8 233 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 PHTF2Q8N3S3 785 aa9.94□□□□□ -0.82
SYNE2-224ENST00000557024 ZNF513Q8N8E2 541 aaPredicted RBP9.94□□□□□ -0.82
SYNE2-224ENST00000557024 NAT16Q8N8M0 369 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms