RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 IL37Q9NZH6 218 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 DAAM1Q9Y4D1 1078 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 ZNF638Q14966 1978 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 OBSL1O75147 1896 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 SOBPA7XYQ1 873 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 NARSO43776 548 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 PRAMEF12O95522 483 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 MBL2P11226 248 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 FCARP24071 287 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 CLCN1P35523 988 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 SOX5P35711 763 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 PLA2G4AP47712 749 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 ZXDAP98168 799 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 PLCB2Q00722 1185 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 ADIGQ0VDE8 80 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 NR1I3Q14994 352 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 PKDCCQ504Y2 493 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 HECTD3Q5T447 861 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 TAF3Q5VWG9 929 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 PASD1Q8IV76 773 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 CELF5Q8N6W0 485 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 SLC35F5Q8WV83 523 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 SLC22A12Q96S37 553 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 ULBP1Q9BZM6 244 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 EPHX3Q9H6B9 360 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 IFNKQ9P0W0 207 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 NAGPAQ9UK23 515 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 FBXL21Q9UKT6 434 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 SCML2Q9UQR0 700 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 PATJQ8NI35 1801 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 PRUNE2Q8WUY3 3088 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 MYO16Q9Y6X6 1858 aa12.06□□□□□ -0.48
CCDC88C-212ENST00000556767 DENND4CQ5VZ89 1909 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 A0A1W2PQC6 194 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 A0A1W2PQH9 124 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 FAM92AA1XBS5 289 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 PI4K2BG5E9Z4 385 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 ZBED1O96006 694 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 TPM3P06753 285 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 CFHP08603 1231 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 RALAP11233 206 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 CYP11B1P15538 503 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 PSMC3P17980 439 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 GDI1P31150 447 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 GPC5P78333 572 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 ARID5AQ03989 594 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 RAB41Q5JT25 222 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 SMYD5Q6GMV2 418 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 PMF1Q6P1K2 205 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 CC2D1AQ6P1N0 951 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 VITQ6UXI7 678 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 CCDC186Q7Z3E2 898 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 UBALD2Q8IYN6 164 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 BPIFB1Q8TDL5 484 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 DEPDC1BQ8WUY9 529 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 KCTD13Q8WZ19 329 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 NDRG1Q92597 394 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 EDAQ92838 391 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 USP13Q92995 863 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 RSPRY1Q96DX4 576 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 TRMT61BQ9BVS5 477 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 MIS12Q9H081 205 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 CCSER2Q9H7U1 834 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 BRD9Q9H8M2 597 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 NMUR1Q9HB89 426 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 TRPV4Q9HBA0 871 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 TDP1Q9NUW8 608 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 SMPD4Q9NXE4 827 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 DUSP12Q9UNI6 340 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 CEP83Q9Y592 693 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 USP3Q9Y6I4 520 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 NCANO14594 1321 aa12.05□□□□□ -0.48
CCDC88C-212ENST00000556767 ANAPC1Q9H1A4 1944 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 FAM170AA1A519 330 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 ZNF263O14978 683 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 COCHO43405 550 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 TLR5O60602 858 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 SRFP11831 508 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 RARGP13631 454 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 PFKLP17858 780 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 WEE1P30291 646 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 GPD2P43304 727 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 PGFP49763 221 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 PSEN1P49768 467 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 JAM2P57087 298 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 YWHAGP61981 247 aaKnown RBP eCLIP12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 BTBD8Q5XKL5 378 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 RSRC2Q7L4I2 434 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 MFSD6LQ8IWD5 586 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 ARHGAP18Q8N392 663 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 GOLGA1Q92805 767 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 HSFY1Q96LI6 401 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 NOX5Q96PH1 765 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 XPO4Q9C0E2 1151 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 RNF38Q9H0F5 515 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 SYNCQ9H7C4 482 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 KIF9Q9HAQ2 790 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 THG1LQ9NWX6 298 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 OBP2AQ9NY56 170 aa12.04□□□□□ -0.48
CCDC88C-212ENST00000556767 NUDT5Q9UKK9 219 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms