RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 TYK2P29597 1187 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 IREB2P48200 963 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 HADHBP55084 474 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 RPL10AP62906 217 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 SARNPP82979 210 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 CPT1BQ92523 772 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 R3HDMLQ9H3Y0 253 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 SNTG2Q9NY99 539 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 CPSF2Q9P2I0 782 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 PIN4Q9Y237 131 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 C5orf60A6NFR6 353 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 DYNC1LI2O43237 492 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 HCRTO43612 131 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 OPHN1O60890 802 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 AMPD1P23109 780 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 CDKN2BP42772 138 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 PREPLQ4J6C6 727 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 MFSD5Q6N075 450 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 TTC7BQ86TV6 843 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 TEX2Q8IWB9 1127 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 OSMRQ99650 979 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 NTPCRQ9BSD7 190 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 RNPEPQ9H4A4 650 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 ST6GALNAC4Q9H4F1 302 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 SMARCAD1Q9H4L7 1026 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 DHX33Q9H6R0 707 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 SENP1Q9P0U3 644 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 SLC17A6Q9P2U8 582 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 GPR25O00155 361 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 MTA2O94776 668 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 ARIH2O95376 493 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 TOP3BO95985 862 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 SLC4A1P02730 911 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 AQP5P55064 265 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 MCL1Q07820 350 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 CACNB2Q08289 660 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 ITKQ08881 620 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 TWF2Q6IBS0 349 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 SIX6OS1Q8N1H7 587 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 CDKL2Q92772 493 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 TXLNGYQ9BZA5 131 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 SETD4Q9NVD3 440 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 UGT1A9O60656 530 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 PLA2G6O60733 806 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 DGKIO75912 1065 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 GSTA1P08263 222 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 UBTFL6P0CB48 400 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 CCDC130P13994 396 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 IVDP26440 423 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 ABCD1P33897 745 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 TAP1Q03518 808 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 CAPRIN2Q6IMN6 1127 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 PRPF39Q86UA1 669 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 RNF135Q8IUD6 432 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 CHST13Q8NET6 341 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 PIWIL1Q96J94 861 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 MAGEB5Q9BZ81 275 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 UGT1A7Q9HAW7 530 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 UGT1A10Q9HAW8 530 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 UGT1A8Q9HAW9 530 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 SHOC2Q9UQ13 582 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 CHKBQ9Y259 395 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 C15orf41Q9Y2V0 281 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 UNC5CO95185 931 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 RBP5P82980 135 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 ANKRD20A2Q5SQ80 823 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 ANKRD20A1Q5TYW2 823 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 ALYREFQ86V81 257 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 ARHGAP24Q8N264 748 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 MCUQ8NE86 351 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 SLC26A7Q8TE54 656 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 VCPIP1Q96JH7 1222 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 FBXL18Q96ME1 805 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 TEPSINQ96N21 525 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 SRPK1Q96SB4 655 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 TCRBV9S1A1TA0A576 114 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 SNRPAP09012 282 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 CTSHP09668 335 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 PPP1R2P3Q6NXS1 205 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 RGS9BPQ6ZS82 235 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 FAM183BPQ6ZVS7 135 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 E2F7Q96AV8 911 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 ELOVL4Q9GZR5 314 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 MAP3K20Q9NYL2 800 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 ZFATQ9P243 1243 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 SYNPO2Q9UMS6 1093 aa12.63□□□□□ -0.39
CCDC88C-211ENST00000556726 EME2A4GXA9 379 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 SOWAHBA6NEL2 793 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 ZWINTO95229 277 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 SRGAP2BP0DMP2 458 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 AP3M2P53677 418 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 SEPT6Q14141 434 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 SPDYCQ5MJ68 293 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 C1orf127Q8N9H9 656 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 SLC10A4Q96EP9 437 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 SGF29Q96ES7 293 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 ERAP1Q9NZ08 941 aa12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 AHDC1Q5TGY3 1603 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 MYO18AQ92614 2054 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-211ENST00000556726 SPECC1L-ADORA2AF8WAN1 911 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms