RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 GOLGA2P5Q9HBQ8 144 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 PRRC2BQ5JSZ5 2229 aaKnown RBP15.46■□□□□ 0.07
CUX1-215ENST00000556210 KRT38O76015 456 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 ATP4AP20648 1035 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 KDELR1P24390 212 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 SULT1E1P49888 294 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 NLRP9Q7RTR0 991 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 RSPH3Q86UC2 560 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 ERO1BQ86YB8 467 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 SLC16A10Q8TF71 515 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 STOML1Q9UBI4 398 aa15.46■□□□□ 0.07
CUX1-215ENST00000556210 PAEPP09466 180 aa15.46■□□□□ 0.06
CUX1-215ENST00000556210 AMPD1P23109 780 aa15.46■□□□□ 0.06
CUX1-215ENST00000556210 TAP1Q03518 808 aa15.46■□□□□ 0.06
CUX1-215ENST00000556210 RYBPQ8N488 228 aaPredicted RBP15.46■□□□□ 0.06
CUX1-215ENST00000556210 CAMKK2Q96RR4 588 aa15.46■□□□□ 0.06
CUX1-215ENST00000556210 R3HDMLQ9H3Y0 253 aa15.46■□□□□ 0.06
CUX1-215ENST00000556210 WLSQ5T9L3 541 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 CRELD2Q6UXH1 353 aaPredicted RBP15.45■□□□□ 0.06
CUX1-215ENST00000556210 CRLF3Q8IUI8 442 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 EXT2Q93063 718 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 ASB14A6NK59 587 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 C6orf222P0C671 652 aaPredicted RBP15.45■□□□□ 0.06
CUX1-215ENST00000556210 GNL1P36915 607 aaPredicted RBP15.45■□□□□ 0.06
CUX1-215ENST00000556210 SLC12A2P55011 1212 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 OGDHQ02218 1023 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 NR1H3Q13133 447 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 CHI3L2Q15782 390 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 ZPBP2Q6X784 338 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 USP6NLQ92738 828 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 RMDN2Q96LZ7 410 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 STRCQ7RTU9 1775 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 TNRC6CQ9HCJ0 1690 aaKnown RBP15.45■□□□□ 0.06
CUX1-215ENST00000556210 NEMP1O14524 444 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 MAFO75444 373 aaPredicted RBP15.45■□□□□ 0.06
CUX1-215ENST00000556210 UPP2O95045 317 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 ATXN1P54253 815 aaKnown RBP15.45■□□□□ 0.06
CUX1-215ENST00000556210 BZW1Q7L1Q6 419 aaKnown RBP15.45■□□□□ 0.06
CUX1-215ENST00000556210 CCDC125Q86Z20 511 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 AGGF1Q8N302 714 aaeCLIP15.45■□□□□ 0.062e-7■■■■■ 57.8
CUX1-215ENST00000556210 GPRC5AQ8NFJ5 357 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 SLC7A14Q8TBB6 771 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 ZFATQ9P243 1243 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 WDR35Q9P2L0 1181 aa15.45■□□□□ 0.06
CUX1-215ENST00000556210 hCG_1818297A0A087WSY0 165 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 LRCH4O75427 683 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 ERBB2P04626 1255 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 F7P08709 466 aaPredicted RBP15.44■□□□□ 0.06
CUX1-215ENST00000556210 ADORA2AP29274 412 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 MORF4L2Q15014 288 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 C16orf46Q6P387 395 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 DDX1Q92499 740 aaKnown RBP15.44■□□□□ 0.06
CUX1-215ENST00000556210 LENG1Q96BZ8 264 aaPredicted RBP15.44■□□□□ 0.06
CUX1-215ENST00000556210 TWNKQ96RR1 684 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 NTPCRQ9BSD7 190 aaKnown RBP15.44■□□□□ 0.06
CUX1-215ENST00000556210 ACSS2Q9NR19 701 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 CACNG4Q9UBN1 327 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 SMG5Q9UPR3 1016 aaKnown RBP15.44■□□□□ 0.06
CUX1-215ENST00000556210 COQ4Q9Y3A0 265 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 PLCH1Q4KWH8 1693 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 C9orf131Q5VYM1 1079 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 TMEM154Q6P9G4 183 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 CCNYL1Q8N7R7 359 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 DNAJB3Q8WWF6 145 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 SH3GL3Q99963 347 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 TRIM56Q9BRZ2 755 aaKnown RBP15.44■□□□□ 0.06
CUX1-215ENST00000556210 MECRQ9BV79 373 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 DLGAP2Q9P1A6 1054 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 NUDT5Q9UKK9 219 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 NAV1Q8NEY1 1877 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 H3BRJ5 948 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 USP2O75604 605 aaPredicted RBP15.44■□□□□ 0.06
CUX1-215ENST00000556210 ARF4P18085 180 aaPredicted RBP15.44■□□□□ 0.06
CUX1-215ENST00000556210 EPHB2P29323 1055 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 FASTKD5Q7L8L6 764 aaKnown RBP15.44■□□□□ 0.06
CUX1-215ENST00000556210 ZCCHC9Q8N567 271 aaKnown RBP15.44■□□□□ 0.06
CUX1-215ENST00000556210 ATXN2LQ8WWM7 1075 aaKnown RBP15.44■□□□□ 0.06
CUX1-215ENST00000556210 EDEM1Q92611 657 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 MAGEB18Q96M61 343 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 MYLK2Q9H1R3 596 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 SLC17A7Q9P2U7 560 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 CPA4Q9UI42 421 aa15.44■□□□□ 0.06
CUX1-215ENST00000556210 GOLGA4Q13439 2230 aaKnown RBP15.43■□□□□ 0.06
CUX1-215ENST00000556210 HCRTO43612 131 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 CETPP11597 493 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 ACO1P21399 889 aaKnown RBP15.43■□□□□ 0.06
CUX1-215ENST00000556210 GTF2A2P52657 109 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 KLC1Q07866 573 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 SLC1A5Q15758 541 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 C1orf127Q8N9H9 656 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 DNAJC9Q8WXX5 260 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 C18orf25Q96B23 403 aaPredicted RBP15.43■□□□□ 0.06
CUX1-215ENST00000556210 HAPLN2Q9GZV7 340 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 NACA2Q9H009 215 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 PCDH9Q9HC56 1237 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 COL16A1Q07092 1604 aaPredicted RBP15.43■□□□□ 0.06
CUX1-215ENST00000556210 M0QYT0 321 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 CELF3Q5SZQ8 465 aaKnown RBP15.43■□□□□ 0.06
CUX1-215ENST00000556210 SLC30A9Q6PML9 568 aa15.43■□□□□ 0.06
CUX1-215ENST00000556210 LBX2Q6XYB7 198 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms