RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 IFT20Q8IY31 132 aa11.8□□□□□ -0.52
SHMT2-216ENST00000554975 COG1Q8WTW3 980 aa11.8□□□□□ -0.52
SHMT2-216ENST00000554975 SPIRE2Q8WWL2 714 aa11.8□□□□□ -0.52
SHMT2-216ENST00000554975 CTNNBL1Q8WYA6 563 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-216ENST00000554975 NAP1L3Q99457 506 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-216ENST00000554975 TMEM121BQ9BXQ6 578 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-216ENST00000554975 ARRDC1-AS1Q9H2J1 176 aa11.8□□□□□ -0.52
SHMT2-216ENST00000554975 BRD9Q9H8M2 597 aa11.8□□□□□ -0.52
SHMT2-216ENST00000554975 ZNF334Q9HCZ1 680 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-216ENST00000554975 ADAMTS1Q9UHI8 967 aa11.8□□□□□ -0.52
SHMT2-216ENST00000554975 NENFQ9UMX5 172 aa11.8□□□□□ -0.52
SHMT2-216ENST00000554975 USP20Q9Y2K6 914 aa11.8□□□□□ -0.52
SHMT2-216ENST00000554975 ASCC3Q8N3C0 2202 aaKnown RBP11.8□□□□□ -0.52
SHMT2-216ENST00000554975 PGRMC1O00264 195 aaKnown RBP11.79□□□□□ -0.52
SHMT2-216ENST00000554975 MAN2B1O00754 1011 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 GIPC1O14908 333 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 AXIN1O15169 862 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 BUB1O43683 1085 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 SRGAP2O75044 1071 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 KCNK5O95279 499 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 NPTXRO95502 500 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 ARF4P18085 180 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-216ENST00000554975 GTF2H1P32780 548 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 OR1D2P34982 312 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 CCR2P41597 374 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 MXI1P50539 228 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 VAMP7P51809 220 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 ARID5AQ03989 594 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 RAB33AQ14088 237 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 FAM78AQ5JUQ0 283 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 PRSS36Q5K4E3 855 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 STPG1Q5TH74 334 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 DPY19L2P1Q6NXN4 242 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 VITQ6UXI7 678 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 ZNF571Q7Z3V5 609 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-216ENST00000554975 IFNLR1Q8IU57 520 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-216ENST00000554975 MAP4K3Q8IVH8 894 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 RHOT2Q8IXI1 618 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 DAW1Q8N136 415 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 BSNDQ8WZ55 320 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 KCNN1Q92952 543 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 RUFY1Q96T51 708 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 IER2Q9BTL4 223 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 C2orf40Q9H1Z8 148 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 PRMT7Q9NVM4 692 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-216ENST00000554975 GDE1Q9NZC3 331 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 DNAJC12Q9UKB3 198 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 DUSP10Q9Y6W6 482 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 PIAS3Q9Y6X2 628 aa11.79□□□□□ -0.52
SHMT2-216ENST00000554975 SMG1Q96Q15 3661 aaKnown RBP11.79□□□□□ -0.52
SHMT2-216ENST00000554975 ABCA7Q8IZY2 2146 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 CCDC169A6NNP5 214 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 PTGESO14684 152 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 PRKCBP05771 671 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 GDI1P31150 447 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 NAMPTP43490 491 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 NOP2P46087 812 aaKnown RBP11.78□□□□□ -0.52
SHMT2-216ENST00000554975 SOX9P48436 509 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 HADHBP55084 474 aaKnown RBP11.78□□□□□ -0.52
SHMT2-216ENST00000554975 PPP2R5DQ14738 602 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 MAPK6Q16659 721 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 ZC2HC1CQ53FD0 456 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-216ENST00000554975 PSAPL1Q6NUJ1 521 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 PPP1R2P3Q6NXS1 205 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 ENOSF1Q7L5Y1 443 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 PEX26Q7Z412 305 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 HAUS6Q7Z4H7 955 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 LONP2Q86WA8 852 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 HACE1Q8IYU2 909 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 KDF1Q8NAX2 398 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-216ENST00000554975 TMC2Q8TDI7 906 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 CAVIN3Q969G5 261 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 ZSWIM3Q96MP5 696 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 KIFC3Q9BVG8 833 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 NFKBIZQ9BYH8 718 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 KIAA1586Q9HCI6 787 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 TFR2Q9UP52 801 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 WASF3Q9UPY6 502 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 CACNA1EQ15878 2313 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 LAMA5O15230 3695 aa11.78□□□□□ -0.52
SHMT2-216ENST00000554975 LOC400499M0QZD8 3231 aa11.77□□□□□ -0.52
SHMT2-216ENST00000554975 PCNX2A6NKB5 2137 aa11.77□□□□□ -0.52
SHMT2-216ENST00000554975 ITPR1Q14643 2758 aa11.77□□□□□ -0.53
SHMT2-216ENST00000554975 NUP210Q8TEM1 1887 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-216ENST00000554975 MYO16Q9Y6X6 1858 aa11.77□□□□□ -0.53
SHMT2-216ENST00000554975 GOLGA6L10A0A0M3HER8 536 aa11.77□□□□□ -0.53
SHMT2-216ENST00000554975 A6NNZ2 444 aa11.77□□□□□ -0.53
SHMT2-216ENST00000554975 MIF4GDA9UHW6 222 aaKnown RBP11.77□□□□□ -0.53
SHMT2-216ENST00000554975 ARNTLO00327 626 aa11.77□□□□□ -0.53
SHMT2-216ENST00000554975 PDE2AO00408 941 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-216ENST00000554975 OPA1O60313 960 aa11.77□□□□□ -0.53
SHMT2-216ENST00000554975 ZNF806P0C7X5 589 aa11.77□□□□□ -0.53
SHMT2-216ENST00000554975 PEX3P56589 373 aa11.77□□□□□ -0.53
SHMT2-216ENST00000554975 MCCD1P59942 119 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-216ENST00000554975 TUSC3Q13454 348 aa11.77□□□□□ -0.53
SHMT2-216ENST00000554975 PRPF4BQ13523 1007 aaKnown RBP11.77□□□□□ -0.53
SHMT2-216ENST00000554975 DRAP1Q14919 205 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-216ENST00000554975 TCEAL1Q15170 157 aa11.77□□□□□ -0.53
SHMT2-216ENST00000554975 TUBB8Q3ZCM7 444 aa11.77□□□□□ -0.53
SHMT2-216ENST00000554975 CDCA2Q69YH5 1023 aaPredicted RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms