RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 CENPCQ03188 943 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 SMAD4Q13485 552 aaKnown RBP12.88□□□□□ -0.35
SHMT2-209ENST00000553949 ASTE1Q2TB18 679 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-209ENST00000553949 PRSS36Q5K4E3 855 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 PM20D1Q6GTS8 502 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 ERICH1Q86X53 443 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 PHF13Q86YI8 300 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-209ENST00000553949 MSANTD4Q8NCY6 345 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 IPO4Q8TEX9 1081 aaKnown RBP12.88□□□□□ -0.35
SHMT2-209ENST00000553949 FBXO32Q969P5 355 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 CCDC42Q96M95 316 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 RIPOR3Q96MK2 946 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 SLITRK1Q96PX8 696 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 ULBP1Q9BZM6 244 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 MIS12Q9H081 205 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 DEF6Q9H4E7 631 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 NHEJ1Q9H9Q4 299 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-209ENST00000553949 WDR6Q9NNW5 1121 aaKnown RBP12.88□□□□□ -0.35
SHMT2-209ENST00000553949 CNGB3Q9NQW8 809 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 TAS2R14Q9NYV8 317 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 TJP2Q9UDY2 1190 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 USP15Q9Y4E8 981 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-209ENST00000553949 SPTBN5Q9NRC6 3674 aaKnown RBP12.87□□□□□ -0.35
SHMT2-209ENST00000553949 A0A087X0T9 212 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 A0A1W2PRU2 124 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 GRXCR2A6NFK2 248 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 TMCO5BA8MYB1 307 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 PAPSS1O43252 624 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-209ENST00000553949 AKR1B10O60218 316 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 TADA3O75528 432 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 FBXO21O94952 628 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 ZBED1O96006 694 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 F11P03951 625 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 FAM228BP0C875 321 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 GZMAP12544 262 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 CDC25CP30307 473 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 CCR2P41597 374 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 GABRB2P47870 512 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 PPP3CCP48454 512 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 GFPT1Q06210 699 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-209ENST00000553949 SLC5A9Q2M3M2 681 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 LEXMQ3ZCV2 418 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 ACAD10Q6JQN1 1059 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 PPP1R2P3Q6NXS1 205 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 MMS22LQ6ZRQ5 1243 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 GAREM2Q75VX8 874 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 TMEM150AQ86TG1 271 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 SCUBE3Q8IX30 993 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 SCML4Q8N228 414 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 PDZD8Q8NEN9 1154 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 OVCA2Q8WZ82 227 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 SUSD6Q92537 303 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 NDRG1Q92597 394 aaKnown RBP12.87□□□□□ -0.35
SHMT2-209ENST00000553949 C18orf8Q96DM3 657 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 TCEAL4Q96EI5 215 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 PDLIM2Q96JY6 352 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 NECTIN4Q96NY8 510 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 GCNAQ96QF7 691 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 BAG1Q99933 345 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-209ENST00000553949 ATXN3LQ9H3M9 355 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 PRDM6Q9NQX0 595 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 GMIPQ9P107 970 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 CHORDC1Q9UHD1 332 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-209ENST00000553949 MRPS23Q9Y3D9 190 aaKnown RBP12.87□□□□□ -0.35
SHMT2-209ENST00000553949 MTCL1Q9Y4B5 1905 aaKnown RBP12.87□□□□□ -0.35
SHMT2-209ENST00000553949 NCANO14594 1321 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 CLUHO75153 1309 aa12.87□□□□□ -0.35
SHMT2-209ENST00000553949 ZNF840PA6NDX5 716 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 NRG2O14511 850 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-209ENST00000553949 ZNF197O14709 1029 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 MBTPS2O43462 519 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 MOSPD3O75425 235 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 FTLP02792 175 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-209ENST00000553949 ZDHHC11BP0C7U3 371 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 GJA1P17302 382 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 FSHRP23945 695 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 PGFP49763 221 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 DAOAP59103 153 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 MRPS5P82675 430 aaKnown RBP12.86□□□□□ -0.35
SHMT2-209ENST00000553949 PTP4A2Q12974 167 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 CBX2Q14781 532 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-209ENST00000553949 SLC18A3Q16572 532 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 C2CD6Q53TS8 623 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 FAM183BPQ6ZVS7 135 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 BHLHA9Q7RTU4 235 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 MON1AQ86VX9 555 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 TMTC1Q8IUR5 882 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 ARHGAP18Q8N392 663 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 SHKBP1Q8TBC3 707 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 CLEC4CQ8WTT0 213 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 IRGQQ8WZA9 623 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 C11orf70Q9BRQ4 267 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 NMUR1Q9HB89 426 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 TLR8Q9NR97 1041 aaKnown RBP12.86□□□□□ -0.35
SHMT2-209ENST00000553949 TRPM5Q9NZQ8 1165 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 ADAM22Q9P0K1 906 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 NAGPAQ9UK23 515 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 NENFQ9UMX5 172 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 PRUNE2Q8WUY3 3088 aa12.86□□□□□ -0.35
SHMT2-209ENST00000553949 A0A1W2PQH9 124 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms