RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CUL2Q13617 745 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 GAS6Q14393 721 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 PDGFRLQ15198 375 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 EML3Q32P44 896 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 ARHGAP17Q68EM7 881 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 CC2D1AQ6P1N0 951 aaPredicted RBP10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 C1orf228Q6PIY5 440 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 TMEM176AQ96HP8 235 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 ZFRQ96KR1 1074 aaKnown RBP10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 HEXIM2Q96MH2 286 aaKnown RBP10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 SRRTQ9BXP5 876 aaKnown RBP10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 DUSP16Q9BY84 665 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 LINC00597Q9H2U6 94 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 PNPLA8Q9NP80 782 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 LMBRD1Q9NUN5 540 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 SPATA6Q9NWH7 488 aaPredicted RBP10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 GMIPQ9P107 970 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 RWDD2AQ9UIY3 292 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 WNT6Q9Y6F9 365 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 LEFTY2O00292 366 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 P4HA2O15460 535 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 COCHO43405 550 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 GNA14O95837 355 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 ABL1P00519 1130 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 TRIM21P19474 475 aaKnown RBP10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 ACO1P21399 889 aaKnown RBP10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 TUBP50607 506 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 LRMPQ12912 555 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 CCINQ13939 588 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 PON2Q15165 354 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 IRF2BP1Q8IU81 584 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 KIAA1958Q8N8K9 716 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 MLKLQ8NB16 471 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 FBXO44Q9H4M3 255 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 CCSER2Q9H7U1 834 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 ECT2Q9H8V3 914 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 PRMT8Q9NR22 394 aaPredicted RBP10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 RBM12Q9NTZ6 932 aaKnown RBP10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 DUS2Q9NX74 493 aaKnown RBP10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 SMPD4Q9NXE4 827 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 SCML2Q9UQR0 700 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 CPQQ9Y646 472 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 USP3Q9Y6I4 520 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 F5P12259 2224 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 EPG5Q9HCE0 2579 aa10.86□□□□□ -0.67
CCDC88C-206ENST00000553437 TRDMT1O14717 391 aaKnown RBP10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 LAMTOR5O43504 91 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 TDGF1P13385 188 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 GJA4P35212 333 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 IFNAR2P48551 515 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 KIF11P52732 1056 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 KCNH2Q12809 1159 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 ZNF528Q3MIS6 628 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 TMEM196Q5HYL7 178 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 HECTD3Q5T447 861 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 NAIF1Q69YI7 327 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 FSTL4Q6MZW2 842 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 EHBP1Q8NDI1 1231 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 NELL1Q92832 810 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 KAT5Q92993 513 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 IER2Q9BTL4 223 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 UBXN6Q9BZV1 441 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 DNAI2Q9GZS0 605 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 NMUR1Q9HB89 426 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 FBRSL1Q9HCM7 1045 aaKnown RBP10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 OSER1Q9NX31 292 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 FBXO4Q9UKT5 387 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 SSUH2Q9Y2M2 353 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 CACNA1BQ00975 2339 aa10.85□□□□□ -0.67
CCDC88C-206ENST00000553437 RNF225M0QZC1 329 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 CYP26A1O43174 497 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 FGFR1OPO95684 399 aaKnown RBP10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 TBX18O95935 607 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 AFPP02771 609 aaKnown RBP10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 MBL2P11226 248 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 TBXAS1P24557 533 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 GALK1P51570 392 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 CSTF1Q05048 431 aaKnown RBP10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 LRRC32Q14392 662 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 GAB4Q2WGN9 574 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 RAB41Q5JT25 222 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 DGKKQ5KSL6 1271 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 Q6ZS52 159 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 ASCL5Q7RTU5 278 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 SCD5Q86SK9 330 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 TTC30AQ86WT1 665 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 ADGRG2Q8IZP9 1017 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 CPA6Q8N4T0 437 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 ANKRD52Q8NB46 1076 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 TTC16Q8NEE8 873 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 ATP2A3Q93084 1043 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 WBP2Q969T9 261 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 JAKMIP2Q96AA8 810 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 NT5C1BQ96P26 610 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 ZSWIM1Q9BR11 485 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 CYLDQ9NQC7 956 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 TLR8Q9NR97 1041 aaKnown RBP10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 CFAP97Q9P2B7 532 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 R4GN57 208 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms