RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 PTPRDP23468 1912 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 GREB1Q4ZG55 1949 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 ANAPC1Q9H1A4 1944 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 A0A1W2PQ27 194 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 A0A1W2PQ64 194 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 A0A1W2PQD8 194 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.51□□□□□ -0.25
LINC00643-202ENST00000553426 RHOBTB3O94955 611 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 VNN1O95497 513 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 ASS1P00966 412 aaKnown RBP13.51□□□□□ -0.25
LINC00643-202ENST00000553426 PSMC2P35998 433 aaKnown RBP13.51□□□□□ -0.25
LINC00643-202ENST00000553426 TUBP50607 506 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 NDUFA8P51970 172 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 NDST1P52848 882 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 SLC5A3P53794 718 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 ZXDBP98169 803 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 DHCR24Q15392 516 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 ELF2Q15723 593 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 PREPLQ4J6C6 727 aaPredicted RBP13.51□□□□□ -0.25
LINC00643-202ENST00000553426 NAIF1Q69YI7 327 aaPredicted RBP13.51□□□□□ -0.25
LINC00643-202ENST00000553426 NUDT18Q6ZVK8 323 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 CRYBG2Q8N1P7 616 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 C12orf50Q8NA57 414 aaPredicted RBP13.51□□□□□ -0.25
LINC00643-202ENST00000553426 TSTD1Q8NFU3 115 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 SCAMP5Q8TAC9 235 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 OTUB2Q96DC9 234 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 PNKPQ96T60 521 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 ARRDC1-AS1Q9H2J1 176 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 EBF1Q9UH73 591 aa13.51□□□□□ -0.25
LINC00643-202ENST00000553426 FAM237AA0A1B0GTK4 181 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 E2F8A0AVK6 867 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 COCHO43405 550 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 ALDH1A2O94788 518 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 RHOBTB1O94844 696 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 HLA-DRAP01903 254 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 APODP05090 189 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 CYP17A1P05093 508 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 FAM200BP0CF97 657 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 CCDC130P13994 396 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 OPRD1P41143 372 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 EIF2DP41214 584 aaKnown RBP13.5□□□□□ -0.25
LINC00643-202ENST00000553426 DGKEP52429 567 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 SEC13P55735 322 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 ENPEPQ07075 957 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 GOLGA8FQ08AF8 430 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 GOLGA8DPQ0D2H9 430 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 ADAM9Q13443 819 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 NFIL3Q16649 462 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 AASDHQ4L235 1098 aaPredicted RBP13.5□□□□□ -0.25
LINC00643-202ENST00000553426 USP39Q53GS9 565 aaKnown RBP13.5□□□□□ -0.25
LINC00643-202ENST00000553426 C2orf27AQ580R0 203 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 SNX30Q5VWJ9 437 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 BTBD8Q5XKL5 378 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 KRBA2Q6ZNG9 492 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 KBTBD6Q86V97 674 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 C11orf74Q86VG3 221 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 FAM186BQ8IYM0 893 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 FUKQ8N0W3 1084 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 GUF1Q8N442 669 aaKnown RBP13.5□□□□□ -0.25
LINC00643-202ENST00000553426 SLC2A14Q8TDB8 520 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 ZC3H10Q96K80 434 aaKnown RBP13.5□□□□□ -0.25
LINC00643-202ENST00000553426 NT5C1AQ9BXI3 368 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 SDCBP2Q9H190 292 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 CYP3A43Q9HB55 503 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 TLR8Q9NR97 1041 aaKnown RBP13.5□□□□□ -0.25
LINC00643-202ENST00000553426 TMEM30AQ9NV96 361 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 IL37Q9NZH6 218 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 MAPK8IP1Q9UQF2 711 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 PCDHGA5Q9Y5G8 931 aa13.5□□□□□ -0.25
LINC00643-202ENST00000553426 DCDC2BA2VCK2 349 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 TNFRSF10BO14763 440 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 SCAMP3O14828 347 aaKnown RBP13.49□□□□□ -0.25
LINC00643-202ENST00000553426 SLC30A4O14863 429 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 ZNF202O95125 648 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 EPN2O95208 641 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 ZNF806P0C7X5 589 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 ADH5P11766 374 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 ADORA2BP29275 332 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 HOXC13P31276 330 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 GCLMP48507 274 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 MAP3K7CLP57077 242 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 MRPS21P82921 87 aaKnown RBP13.49□□□□□ -0.25
LINC00643-202ENST00000553426 GAD2Q05329 585 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 DPYDQ12882 1025 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 ORC1Q13415 861 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 HSF5Q4G112 596 aaPredicted RBP13.49□□□□□ -0.25
LINC00643-202ENST00000553426 IL31Q6EBC2 164 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 SPOPLQ6IQ16 392 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 PAQR9Q6ZVX9 377 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 USP33Q8TEY7 942 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 DDX1Q92499 740 aaKnown RBP13.49□□□□□ -0.25
LINC00643-202ENST00000553426 EZH1Q92800 747 aaPredicted RBP13.49□□□□□ -0.25
LINC00643-202ENST00000553426 ELMO3Q96BJ8 720 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 CCSER2Q9H7U1 834 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 ARHGEF4Q9NR80 690 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 FAM49BQ9NUQ9 324 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 GMIPQ9P107 970 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 ZDHHC9Q9Y397 364 aa13.49□□□□□ -0.25
LINC00643-202ENST00000553426 HELZP42694 1942 aaKnown RBP13.49□□□□□ -0.25
LINC00643-202ENST00000553426 ATG2BQ96BY7 2078 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms