RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 ABL1P00519 1130 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 CHRM1P11229 460 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-221ENST00000550914 ADH5P11766 374 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 YWHAQP27348 245 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 GRIA2P42262 883 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 TUBP50607 506 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 AP3M2P53677 418 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 CACNA2D1P54289 1103 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 PREPLQ4J6C6 727 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-221ENST00000550914 SPDYCQ5MJ68 293 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 RHBDF2Q6PJF5 856 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 CYP2U1Q7Z449 544 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 IL17RCQ8NAC3 791 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 GOLGA5Q8TBA6 731 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 KCNV2Q8TDN2 545 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 WHAMMQ8TF30 809 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 ZNF516Q92618 1163 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 B3GNT5Q9BYG0 378 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 TPSD1Q9BZJ3 242 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 ZNF518BQ9C0D4 1074 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 GZF1Q9H116 711 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-221ENST00000550914 DPEP3Q9H4B8 488 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 POLMQ9NP87 494 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-221ENST00000550914 COMMD8Q9NX08 183 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 SMPD4Q9NXE4 827 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 IL37Q9NZH6 218 aa13.66□□□□□ -0.22
PTCH1-221ENST00000550914 DSPP15924 2871 aaKnown RBP13.65□□□□□ -0.22
PTCH1-221ENST00000550914 FAM92AA1XBS5 289 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 C4orf47A7E2U8 309 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 MBL2P11226 248 aaPredicted RBP13.65□□□□□ -0.22
PTCH1-221ENST00000550914 PDIA4P13667 645 aaKnown RBP13.65□□□□□ -0.22
PTCH1-221ENST00000550914 P2RY2P41231 377 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 DPP6P42658 865 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 KIR2DL1P43626 348 aaPredicted RBP13.65□□□□□ -0.22
PTCH1-221ENST00000550914 MYL6P60660 151 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 CLDN10P78369 228 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 BYSLQ13895 437 aaKnown RBP13.65□□□□□ -0.22
PTCH1-221ENST00000550914 KNOP1Q1ED39 458 aaKnown RBP13.65□□□□□ -0.22
PTCH1-221ENST00000550914 EOGTQ5NDL2 527 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 HECTD3Q5T447 861 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 PSAPL1Q6NUJ1 521 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 SHC4Q6S5L8 630 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 TMEM92Q6UXU6 159 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 NELFCDQ8IXH7 590 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 CCDC33Q8N5R6 958 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 ALLCQ8N6M5 410 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 TXNDC5Q8NBS9 432 aaKnown RBP13.65□□□□□ -0.22
PTCH1-221ENST00000550914 TMEM174Q8WUU8 243 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 FBXO32Q969P5 355 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 TNIP3Q96KP6 325 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 SPACA7Q96KW9 195 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 DMAP1Q9NPF5 467 aaPredicted RBP13.65□□□□□ -0.22
PTCH1-221ENST00000550914 TMEM9BQ9NQ34 198 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 ARHGEF4Q9NR80 690 aa13.65□□□□□ -0.22
PTCH1-221ENST00000550914 NXF1Q9UBU9 619 aaKnown RBP13.65□□□□□ -0.22
PTCH1-221ENST00000550914 EVLQ9UI08 416 aaPredicted RBP13.65□□□□□ -0.22
PTCH1-221ENST00000550914 ANKRD11Q6UB99 2663 aaPredicted RBP13.65□□□□□ -0.22
PTCH1-221ENST00000550914 ZFYVE26Q68DK2 2539 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 CACNA1GO43497 2377 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 K7ELQ4 463 aaPredicted RBP13.64□□□□□ -0.23
PTCH1-221ENST00000550914 CLDN5O00501 218 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 TNFRSF10BO14763 440 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 HOXC11O43248 304 aaPredicted RBP13.64□□□□□ -0.23
PTCH1-221ENST00000550914 COCHO43405 550 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 PHACTR2O75167 634 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 KLF8O95600 359 aaPredicted RBP13.64□□□□□ -0.23
PTCH1-221ENST00000550914 ZDHHC11BP0C7U3 371 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 CEACAM1P13688 526 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 HNRNPLP14866 589 aaKnown RBP eCLIP13.64□□□□□ -0.23
PTCH1-221ENST00000550914 CSRP1P21291 193 aaKnown RBP13.64□□□□□ -0.23
PTCH1-221ENST00000550914 BCKDHBP21953 392 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 SLC6A11P48066 632 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 NOVA1P51513 510 aaKnown RBP13.64□□□□□ -0.23
PTCH1-221ENST00000550914 GAD2Q05329 585 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 LY6G5CQ5SRR4 150 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 NUDT18Q6ZVK8 323 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 LPCAT2Q7L5N7 544 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 TRMT11Q7Z4G4 463 aaKnown RBP13.64□□□□□ -0.23
PTCH1-221ENST00000550914 FAM35AQ86V20 835 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 C12orf40Q86WS4 652 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 ETFBKMTQ8IXQ9 262 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 PHTF2Q8N3S3 785 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 SMARCD1Q96GM5 515 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 ZFRQ96KR1 1074 aaKnown RBP13.64□□□□□ -0.23
PTCH1-221ENST00000550914 TFIP11Q9UBB9 837 aaKnown RBP13.64□□□□□ -0.23
PTCH1-221ENST00000550914 INVSQ9Y283 1065 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 DMXL2Q8TDJ6 3036 aa13.64□□□□□ -0.23
PTCH1-221ENST00000550914 PKD1L2Q7Z442 2459 aa13.63□□□□□ -0.23
PTCH1-221ENST00000550914 SGK1O00141 431 aa13.63□□□□□ -0.23
PTCH1-221ENST00000550914 CDX4O14627 284 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-221ENST00000550914 POLR2DO15514 142 aaKnown RBP13.63□□□□□ -0.23
PTCH1-221ENST00000550914 EXOC3O60645 756 aa13.63□□□□□ -0.23
PTCH1-221ENST00000550914 HOXD12P35452 270 aa13.63□□□□□ -0.23
PTCH1-221ENST00000550914 TIE1P35590 1138 aa13.63□□□□□ -0.23
PTCH1-221ENST00000550914 DHPSP49366 369 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-221ENST00000550914 SLC5A3P53794 718 aa13.63□□□□□ -0.23
PTCH1-221ENST00000550914 MESP2Q0VG99 397 aa13.63□□□□□ -0.23
PTCH1-221ENST00000550914 IFRD2Q12894 506 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-221ENST00000550914 LMAN2Q12907 356 aa13.63□□□□□ -0.23
PTCH1-221ENST00000550914 NCOA4Q13772 614 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms