RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 THADAQ6YHU6 1953 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 LAD1O00515 517 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 CYP17A1P05093 508 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 TCF3P15923 654 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 HDCP19113 662 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 ITPKAP23677 461 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 RDXP35241 583 aaKnown RBP11.25□□□□□ -0.61
VPS29-208ENST00000550267 SLC6A11P48066 632 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 ATXN3P54252 364 aaPredicted RBP11.25□□□□□ -0.61
VPS29-208ENST00000550267 ZXDBP98169 803 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 SCAPQ12770 1279 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 KCNB1Q14721 858 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 COL28A1Q2UY09 1125 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 MAP7D1Q3KQU3 841 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 INTS6LQ5JSJ4 861 aaKnown RBP11.25□□□□□ -0.61
VPS29-208ENST00000550267 EMC10Q5UCC4 262 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 PEAR1Q5VY43 1037 aaPredicted RBP11.25□□□□□ -0.61
VPS29-208ENST00000550267 RAB44Q7Z6P3 723 aaPredicted RBP11.25□□□□□ -0.61
VPS29-208ENST00000550267 PDZD3Q86UT5 571 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 SCN4BQ8IWT1 228 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 PDCL2Q8N4E4 241 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 DEFB119Q8N690 84 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 MYCT1Q8N699 235 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 IL17RCQ8NAC3 791 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 OR2I1PQ8NGU4 316 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 HMGB4Q8WW32 186 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 CDK5RAP3Q96JB5 506 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 PKMYT1Q99640 499 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 POLMQ9NP87 494 aaPredicted RBP11.25□□□□□ -0.61
VPS29-208ENST00000550267 DDX43Q9NXZ2 648 aaKnown RBP11.25□□□□□ -0.61
VPS29-208ENST00000550267 PILRBQ9UKJ0 227 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 GTF3C4Q9UKN8 822 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 ODF2LQ9ULJ1 636 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 SLC6A14Q9UN76 642 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 L1RE1Q9UN81 338 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 ARHGAP26Q9UNA1 814 aa11.25□□□□□ -0.61
VPS29-208ENST00000550267 TNRC6BQ9UPQ9 1833 aaKnown RBP11.25□□□□□ -0.61
VPS29-208ENST00000550267 PKD1L2Q7Z442 2459 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 TCRBV21S2A2A0A5A6 115 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 LEFTY2O00292 366 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 SCAMP3O14828 347 aaKnown RBP11.24□□□□□ -0.61
VPS29-208ENST00000550267 HCRTO43612 131 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 OPHN1O60890 802 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 FAM13AO94988 1023 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 CD59P13987 128 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 DHX8Q14562 1220 aaKnown RBP11.24□□□□□ -0.61
VPS29-208ENST00000550267 DUOXA1Q1HG43 343 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 TMEM119Q4V9L6 283 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 SPDYCQ5MJ68 293 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 LMBRD2Q68DH5 695 aaPredicted RBP11.24□□□□□ -0.61
VPS29-208ENST00000550267 ADALQ6DHV7 355 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 CRELD2Q6UXH1 353 aaPredicted RBP11.24□□□□□ -0.61
VPS29-208ENST00000550267 FILIP1Q7Z7B0 1213 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 OSTM1Q86WC4 334 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 GPBP1Q86WP2 473 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 PGBD3Q8N328 593 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 FSIP1Q8NA03 581 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 ZNF560Q96MR9 790 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 CAMK1GQ96NX5 476 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 PNKPQ96T60 521 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 ACBD6Q9BR61 282 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 IKZF4Q9H2S9 585 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 ABCB6Q9NP58 842 aa11.24□□□□□ -0.61
VPS29-208ENST00000550267 ABCA7Q8IZY2 2146 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 MYMKA6NI61 221 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 TRAK2O60296 914 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 KAT7O95251 611 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 POLR2BP30876 1174 aaKnown RBP11.23□□□□□ -0.61
VPS29-208ENST00000550267 DPP6P42658 865 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 KIR2DL1P43626 348 aaPredicted RBP11.23□□□□□ -0.61
VPS29-208ENST00000550267 ATP2C1P98194 919 aaPredicted RBP11.23□□□□□ -0.61
VPS29-208ENST00000550267 MYL7Q01449 175 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 KDSRQ06136 332 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 GFPT1Q06210 699 aaPredicted RBP11.23□□□□□ -0.61
VPS29-208ENST00000550267 BYSLQ13895 437 aaKnown RBP11.23□□□□□ -0.61
VPS29-208ENST00000550267 DHCR24Q15392 516 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 ZNF423Q2M1K9 1284 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 RNFT1Q5M7Z0 435 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 EOGTQ5NDL2 527 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 ZNF385CQ66K41 422 aaPredicted RBP11.23□□□□□ -0.61
VPS29-208ENST00000550267 SCARA3Q6AZY7 606 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 C12orf40Q86WS4 652 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 SPATA2LQ8IUW3 424 aaPredicted RBP11.23□□□□□ -0.61
VPS29-208ENST00000550267 MINDY1Q8N5J2 469 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 FAM184AQ8NB25 1140 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 CEP76Q8TAP6 659 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 SPATA18Q8TC71 538 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 FIZ1Q96SL8 496 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 LLPHQ9BRT6 129 aaKnown RBP11.23□□□□□ -0.61
VPS29-208ENST00000550267 ZHX3Q9H4I2 956 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 PARVGQ9HBI0 331 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 CAPN10Q9HC96 672 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 AGO2Q9UKV8 859 aaKnown RBP11.23□□□□□ -0.61
VPS29-208ENST00000550267 AGAP1Q9UPQ3 857 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 ADAMTS20P59510 1910 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 ZNF638Q14966 1978 aaKnown RBP11.23□□□□□ -0.61
VPS29-208ENST00000550267 SCN1AP35498 2009 aa11.23□□□□□ -0.61
VPS29-208ENST00000550267 VWA3AA6NCI4 1184 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 SH3BP5O60239 455 aa11.22□□□□□ -0.61
VPS29-208ENST00000550267 HUS1O60921 280 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms