RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 NUP210Q8TEM1 1887 aaPredicted RBP11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 TICRRQ7Z2Z1 1910 aa11.52□□□□□ -0.56
VTI1BP3-201ENST00000550220 TNFRSF10BO14763 440 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 CETN3O15182 167 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 RPP40O75818 363 aaKnown RBP11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 SMC2O95347 1197 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 APBB3O95704 486 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 ZDHHC11BP0C7U3 371 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 FAM200BP0CF97 657 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 CCDC192P0DO97 292 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 TGM1P22735 817 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 ASPAP45381 313 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 NDST1P52848 882 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 SLC5A3P53794 718 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 CACNA2D1P54289 1103 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 MRPS21P82921 87 aaKnown RBP11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 GOLGA8FQ08AF8 430 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 DMWDQ09019 674 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 GOLGA8DPQ0D2H9 430 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 INCA1Q0VD86 236 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 IFRD2Q12894 506 aaPredicted RBP11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 CSRP2Q16527 193 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 KRT39Q6A163 491 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 SCARA5Q6ZMJ2 495 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 PAQR9Q6ZVX9 377 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 FILIP1Q7Z7B0 1213 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 TADA2BQ86TJ2 420 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 RPLP0P6Q8NHW5 317 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 SLC2A14Q8TDB8 520 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 KCNV2Q8TDN2 545 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 GSDMAQ96QA5 445 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 HNRNPABQ99729 332 aaKnown RBP11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 TSG101Q99816 390 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 NIF3L1Q9GZT8 377 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 PNPLA8Q9NP80 782 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 TLR8Q9NR97 1041 aaKnown RBP11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 KRT82Q9NSB4 513 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 CFAP97Q9P2B7 532 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 CHORDC1Q9UHD1 332 aaPredicted RBP11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 CDV3Q9UKY7 258 aaKnown RBP11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 COL4A2P08572 1712 aa11.52□□□□□ -0.57
VTI1BP3-201ENST00000550220 A0A0A0MRY4 1105 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 AXIN1O15169 862 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 COCHO43405 550 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 RHOBTB1O94844 696 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 EPB41P11171 864 aaKnown RBP11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 RAP1GAPP47736 663 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 GCLMP48507 274 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 PSEN1P49768 467 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 ZXDBP98169 803 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 GAD2Q05329 585 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 SPEM2Q0P670 501 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 DHCR24Q15392 516 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 LPAL2Q16609 132 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 COBLL1Q53SF7 1204 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 C1orf220Q5T0J3 134 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 BTBD8Q5XKL5 378 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 FAM160A2Q8N612 972 aaPredicted RBP11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 SCAMP5Q8TAC9 235 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 NETO1Q8TDF5 533 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 CYFIP2Q96F07 1278 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 ZC3H10Q96K80 434 aaKnown RBP11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 CDK5RAP1Q96SZ6 601 aaKnown RBP11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 PNKPQ96T60 521 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 SDCBP2Q9H190 292 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 SEMA4GQ9NTN9 838 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 TMEM30AQ9NV96 361 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 C2orf42Q9NWW7 574 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 SMPD4Q9NXE4 827 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 MAPK8IP1Q9UQF2 711 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 PCDHGA5Q9Y5G8 931 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 PCDHA5Q9Y5H7 936 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 CEP250Q9BV73 2442 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 PATJQ8NI35 1801 aa11.51□□□□□ -0.57
VTI1BP3-201ENST00000550220 ALDH1A2O94788 518 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 APODP05090 189 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 CYP17A1P05093 508 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 PRR29P0C7W0 189 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 ATP5C1P36542 298 aaKnown RBP11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 OPRD1P41143 372 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 PPP1R2P41236 205 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 GRIA2P42262 883 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 TNFRSF4P43489 277 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 DGKEP52429 567 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 MAP3K7CLP57077 242 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 SLC8A3P57103 927 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 FKBP3Q00688 224 aaKnown RBP11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 PPP3CAQ08209 521 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 DMC1Q14565 340 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 ELF2Q15723 593 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 ZCWPW2Q504Y3 356 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 KLHDC10Q6PID8 442 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 RHBDF2Q6PJF5 856 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 ELOA2Q8IYF1 753 aaPredicted RBP11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 ZNF276Q8N554 614 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 FBXL13Q8NEE6 735 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 TSTD1Q8NFU3 115 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 TAS1R2Q8TE23 839 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 USP33Q8TEY7 942 aa11.5□□□□□ -0.57
VTI1BP3-201ENST00000550220 DDX1Q92499 740 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms