RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CLNKQ7Z7G1 428 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 ZNF354CQ86Y25 554 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 ADGRG5Q8IZF4 528 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 TMEM132CQ8N3T6 1108 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 CYP2W1Q8TAV3 490 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 DNAJB14Q8TBM8 379 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 CAGE1Q8TC20 777 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 TMEM171Q8WVE6 324 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 PPP2R3CQ969Q6 453 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 SORBS1Q9BX66 1292 aaKnown RBP4.86□□□□□ -1.63
VPS29-205ENST00000548539 SLC29A3Q9BZD2 475 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 MAGEH1Q9H213 219 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 CXorf36Q9H7Y0 433 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 XPNPEP3Q9NQH7 507 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 TM7SF3Q9NS93 570 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.86□□□□□ -1.63
VPS29-205ENST00000548539 KCNE5Q9UJ90 142 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 NDRG4Q9ULP0 352 aaKnown RBP4.86□□□□□ -1.63
VPS29-205ENST00000548539 ZMYND8Q9ULU4 1186 aaPredicted RBP4.86□□□□□ -1.63
VPS29-205ENST00000548539 DGKBQ9Y6T7 804 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 FPGT-TNNI3KV9GXZ4 949 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 PRAMEF33A0A0G2JMD5 474 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 ACKR2O00590 384 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 PRAMEF10O60809 474 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 CFIP05156 583 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 IDEP14735 1019 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 KCNA3P22001 575 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 LRPAP1P30533 357 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 DGKEP52429 567 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 GUCY1B3Q02153 619 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 FOXF2Q12947 444 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 DYRK1AQ13627 763 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 CYP2A13Q16696 494 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 TIGD6Q17RP2 521 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 ZNF750Q32MQ0 723 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 TMTC4Q5T4D3 741 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 VPS53Q5VIR6 699 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 KIAA0408Q6ZU52 694 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 KRT28Q7Z3Y7 464 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 TMPRSS9Q7Z410 1059 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 CCDC28AQ8IWP9 274 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 SRRM1Q8IYB3 904 aaKnown RBP4.85□□□□□ -1.63
VPS29-205ENST00000548539 SMAP1Q8IYB5 467 aaPredicted RBP4.85□□□□□ -1.63
VPS29-205ENST00000548539 CACNA2D3Q8IZS8 1091 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 FAM9AQ8IZU1 332 aaPredicted RBP4.85□□□□□ -1.63
VPS29-205ENST00000548539 SNX19Q92543 992 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 TRIM63Q969Q1 353 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 NACC2Q96BF6 587 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 ALOXE3Q9BYJ1 711 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 DHX36Q9H2U1 1008 aaKnown RBP4.85□□□□□ -1.63
VPS29-205ENST00000548539 GBA2Q9HCG7 927 aaPredicted RBP4.85□□□□□ -1.63
VPS29-205ENST00000548539 AGO4Q9HCK5 861 aaKnown RBP4.85□□□□□ -1.63
VPS29-205ENST00000548539 DKK4Q9UBT3 224 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 SERTAD3Q9UJW9 196 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 SCAF8Q9UPN6 1271 aaKnown RBP4.85□□□□□ -1.63
VPS29-205ENST00000548539 HPSEQ9Y251 543 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 NOX1Q9Y5S8 564 aa4.85□□□□□ -1.63
VPS29-205ENST00000548539 A0A1W2PS29 197 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 PIPSLA2A3N6 862 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 UNC119BA6NIH7 251 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 AQP7P3A6NL99 342 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 E7ENX8 843 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 SYT5O00445 386 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 ASNA1O43681 348 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 TLR5O60602 858 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 SOAT2O75908 522 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 USP1O94782 785 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 FGAP02671 866 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 HGFP14210 728 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 ADORA2AP29274 412 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 CD6P30203 668 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 BMPR1AP36894 532 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 RPS7P62081 194 aaKnown RBP4.84□□□□□ -1.63
VPS29-205ENST00000548539 BLOC1S1P78537 153 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 TAP2Q03519 686 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 RESTQ13127 1097 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 E2F2Q14209 437 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 POSTNQ15063 836 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.84□□□□□ -1.63
VPS29-205ENST00000548539 FAXCQ5TGI0 409 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 SLC15A3Q8IY34 581 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 SPARTQ8N0X7 666 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 C9orf106Q8NAJ2 232 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 CPEB3Q8NE35 698 aaKnown RBP4.84□□□□□ -1.63
VPS29-205ENST00000548539 FAM71BQ8TC56 605 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 SLC9A6Q92581 669 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 TBC1D20Q96BZ9 403 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 PRPF18Q99633 342 aaKnown RBP4.84□□□□□ -1.63
VPS29-205ENST00000548539 PAGR1Q9BTK6 254 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 PTDSS2Q9BVG9 487 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 NECTIN3Q9NQS3 549 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 TLK1Q9UKI8 766 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 NEU2Q9Y3R4 380 aa4.84□□□□□ -1.63
VPS29-205ENST00000548539 A0A0B4J269 797 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 DNAJC9-AS1A6NH13 148 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 KCNQ3O43525 872 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 COQ9O75208 318 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 ESRRBO95718 433 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 CSF1RP07333 972 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 PDHA1P08559 390 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms