RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 ATICP31939 592 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 GJA4P35212 333 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 MAPK8P45983 427 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 IFNAR2P48551 515 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 SEC13P55735 322 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 IRX4P78413 519 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 TPD52L1Q16890 204 aaPredicted RBP9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 ZSCAN23Q3MJ62 389 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 SV2CQ496J9 727 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 CCDC40Q4G0X9 1142 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 FBXO43Q4G163 708 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 TDRD10Q5VZ19 366 aaKnown RBP9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 PMS2CLQ68D20 193 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 TXNDC8Q6A555 127 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 ANO7Q6IWH7 933 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 LRSAM1Q6UWE0 723 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 SV2AQ7L0J3 742 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 ARMCX6Q7L4S7 300 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 SYT13Q7L8C5 426 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 METTL23Q86XA0 190 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 FAM114A1Q8IWE2 563 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 THEM5Q8N1Q8 247 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 CPA6Q8N4T0 437 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 OR10T2Q8NGX3 314 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 MRPS31Q92665 395 aaKnown RBP9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 GATA6Q92908 595 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 USP13Q92995 863 aaPredicted RBP9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 CD101Q93033 1021 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 SLC35C1Q96A29 364 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 ACDQ96AP0 544 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 BPIFA3Q9BQP9 254 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 TMEM121BQ9BXQ6 578 aaPredicted RBP9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 NAT10Q9H0A0 1025 aaKnown RBP9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 SLC32A1Q9H598 525 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 VRTNQ9H8Y1 702 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 TMEM8AQ9HCN3 771 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 TRPC7Q9HCX4 862 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 TDP1Q9NUW8 608 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 GDAP2Q9NXN4 497 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 AGAP1Q9UPQ3 857 aa9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 R3HCC1Q9Y3T6 440 aaKnown RBP9.27□□□□□ -0.93
CLSTN3-212ENST00000541770 ABCA7Q8IZY2 2146 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 BAHCC1Q9P281 2608 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 SCN1AP35498 2009 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 CNOT1A5YKK6 2376 aaKnown RBP9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 SYCE3A1L190 88 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 SOBPA7XYQ1 873 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 KPNA7A9QM74 516 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 CDX4O14627 284 aaPredicted RBP9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 CST3P01034 146 aaPredicted RBP9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 CYP11A1P05108 521 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 KRT19P08727 400 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 TRIM49P0CI25 452 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 TRIM49CP0CI26 452 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 CSRP1P21291 193 aaKnown RBP9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 BCKDHBP21953 392 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 MYL5Q02045 173 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 PPP3CAQ08209 521 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 MYO1EQ12965 1108 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 MTF1Q14872 753 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 PDGFRLQ15198 375 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 C2orf27AQ580R0 203 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 SDHAF4Q5VUM1 108 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 KRT39Q6A163 491 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 C11orf57Q6ZUT1 292 aaPredicted RBP9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 DPH6Q7L8W6 267 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 IRF2BP1Q8IU81 584 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 TRIM59Q8IWR1 403 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 SPATA18Q8TC71 538 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 HPDLQ96IR7 371 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 FAM84AQ96KN4 292 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 NUSAP1Q9BXS6 441 aaKnown RBP9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 ZCWPW1Q9H0M4 648 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 XYLT2Q9H1B5 865 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 ECT2Q9H8V3 914 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 KIF9Q9HAQ2 790 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 DUS2Q9NX74 493 aaKnown RBP9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 HSFX1Q9UBD0 423 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 EBF1Q9UH73 591 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 ZMYM5Q9UJ78 669 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 WASF3Q9UPY6 502 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 COQ4Q9Y3A0 265 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 WNT6Q9Y6F9 365 aa9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 HELZP42694 1942 aaKnown RBP9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 TNRC6BQ9UPQ9 1833 aaKnown RBP9.26□□□□□ -0.93
CLSTN3-212ENST00000541770 PTPRDP23468 1912 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 ADAMTS20P59510 1910 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 SPAARA0A1B0GVQ0 90 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 CYB561D2O14569 222 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 P4HA2O15460 535 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 MAP3K13O43283 966 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 PHACTR2O75167 634 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 VNN1O95497 513 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 F11P03951 625 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 CKMP06732 381 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 FAM163BP0C2L3 166 aa9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 HAPLN1P10915 354 aaPredicted RBP9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 PRKCSHP14314 528 aaPredicted RBP9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 DDX6P26196 483 aaKnown RBP eCLIP9.25□□□□□ -0.93
CLSTN3-212ENST00000541770 GCLMP48507 274 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms