RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PPM1LQ5SGD2 360 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 SNX32Q86XE0 403 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 EID3Q8N140 333 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 MREGQ8N565 214 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 SMAD5Q99717 465 aaKnown RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 HS6ST1O60243 411 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 PLOD3O60568 738 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 GUCA1CO95843 209 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 NT5C2P49902 561 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 MAPK12P53778 367 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 TYW3Q6IPR3 259 aaKnown RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 TMEM26Q6ZUK4 368 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 FRMD5Q7Z6J6 570 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 TTC30BQ8N4P2 665 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 FAR2Q96K12 515 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 KMT5AQ9NQR1 393 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 VPS45Q9NRW7 570 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 KCNK4Q9NYG8 393 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 TUBGCP4Q9UGJ1 667 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 INPP4BO15327 924 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 CCNE2O96020 404 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 ACLYP53396 1101 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 SLC25A3Q00325 362 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 PWP1Q13610 501 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 NLRX1Q86UT6 975 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 ULK2Q8IYT8 1036 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 VPS33AQ96AX1 596 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 MAGEB5Q9BZ81 275 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 COMMD8Q9NX08 183 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 PPP2R3BQ9Y5P8 575 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 SH3D21A4FU49 640 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 HAT1O14929 419 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 ATP9BO43861 1147 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 TLR2O60603 784 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 SNAP91O60641 907 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 B3GALNT1O75752 331 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 NELFEP18615 380 aaKnown RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 ADSLP30566 484 aaPredicted RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 IL13P35225 146 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 MTM1Q13496 603 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 ALCAMQ13740 583 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 UBE3CQ15386 1083 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 OCLNQ16625 522 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 FBXO31Q5XUX0 539 aaPredicted RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 POLNQ7Z5Q5 900 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 ERO1BQ86YB8 467 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 HELQQ8TDG4 1101 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 OXER1Q8TDS5 423 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 NACC1Q96RE7 527 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 GPAMQ9HCL2 828 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 NXF1Q9UBU9 619 aaKnown RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 RAB26Q9ULW5 256 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 FAM95CA0A1B0GW59 222 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 MAGEB16A2A368 324 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 SLCO1B7G3V0H7 640 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 HOXD12P35452 270 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 LRRC74AQ0VAA2 488 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 ZNF268Q14587 947 aaPredicted RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 IQSEC1Q6DN90 963 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 TWF2Q6IBS0 349 aaKnown RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 PM20D2Q8IYS1 436 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 ZNF398Q8TD17 642 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 TCP10LQ8TDR4 215 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 FAM89AQ96GI7 184 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 MND1Q9BWT6 205 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 FRMD8Q9BZ67 464 aaPredicted RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 PTPRKQ15262 1439 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 UCHL3P15374 230 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 NPR2P20594 1047 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 GDI2P50395 445 aaKnown RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 BICRALQ6AI39 1079 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 DUS1LQ6P1R4 473 aaKnown RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 ERI1Q8IV48 349 aaKnown RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 CHCHD4Q8N4Q1 142 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 EIF1ADQ8N9N8 165 aaKnown RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 PGBD4Q96DM1 585 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 DCUN1D1Q96GG9 259 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 OSBPL7Q9BZF2 842 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 TCF7L2Q9NQB0 619 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 ZSWIM5Q9P217 1185 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 FBXO40Q9UH90 709 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 POLG2Q9UHN1 485 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 DGKBQ9Y6T7 804 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 P4HBP07237 508 aaKnown RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 ZNF24P17028 368 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 STAT5AP42229 794 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 STAT5BP51692 787 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 MSLNQ13421 630 aaPredicted RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 PON2Q15165 354 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 SPDYE7PQ495Y7 208 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 PLET1Q6UQ28 207 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 CACTIN-AS1Q8N1I8 211 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 BPIFB6Q8NFQ5 453 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 MAGEE2Q8TD90 523 aaPredicted RBP9.03□□□□□ -0.96
YBX3-208ENST00000540447 PLAGL2Q9UPG8 496 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 PHF8Q9UPP1 1060 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 ARHGEF12Q9NZN5 1544 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 CYP2D7A0A087X1C5 515 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 NR5A2O00482 541 aa9.03□□□□□ -0.96
YBX3-208ENST00000540447 A1BGP04217 495 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms