RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 SRGAP2O75044 1071 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 RFPL1O75677 317 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 MT-CO3P00414 261 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 A1BGP04217 495 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 APEHP13798 732 aaKnown RBP4.35□□□□□ -1.71
VPS13A-213ENST00000539950 UQCRC1P31930 480 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 DIO1P49895 249 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 COPB1P53618 953 aaKnown RBP4.35□□□□□ -1.71
VPS13A-213ENST00000539950 SUMO2P61956 95 aaKnown RBP4.35□□□□□ -1.71
VPS13A-213ENST00000539950 FHL1Q13642 323 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 LAMB3Q13751 1172 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 ZNF260Q3ZCT1 412 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 PTCHD4Q6ZW05 846 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 MAEAQ7L5Y9 396 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 ZNF398Q8TD17 642 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 PNISRQ8TF01 805 aaKnown RBP4.35□□□□□ -1.71
VPS13A-213ENST00000539950 CCDC17Q96LX7 622 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 WACQ9BTA9 647 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 C22orf23Q9BZE7 217 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 TRIM5Q9C035 493 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 A1CFQ9NQ94 594 aaKnown RBP4.35□□□□□ -1.71
VPS13A-213ENST00000539950 CPNE7Q9UBL6 633 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 USP22Q9UPT9 525 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 BTBD19C9JJ37 291 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 TMEM232C9JQI7 657 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 H7C4K7 107 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 SPRY2O43597 315 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 CTNND1O60716 968 aaKnown RBP4.34□□□□□ -1.71
VPS13A-213ENST00000539950 RASAL1O95294 804 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 FGBP02675 491 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 HGFP14210 728 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 HOXD9P28356 352 aaPredicted RBP4.34□□□□□ -1.71
VPS13A-213ENST00000539950 PRKAR1BP31321 381 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 FOXG1P55316 489 aaPredicted RBP4.34□□□□□ -1.71
VPS13A-213ENST00000539950 SUMO3P55854 103 aaPredicted RBP4.34□□□□□ -1.71
VPS13A-213ENST00000539950 TIRAPP58753 221 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 SEC23BQ15437 767 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 CACHD1Q5VU97 1274 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 SHC4Q6S5L8 630 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 LINC01465Q8N7H1 131 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.34□□□□□ -1.71
VPS13A-213ENST00000539950 SPSB4Q96A44 273 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 RUNDC1Q96C34 613 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 COQ8BQ96D53 544 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 ZBTB45Q96K62 511 aaPredicted RBP4.34□□□□□ -1.71
VPS13A-213ENST00000539950 PPP1R9BQ96SB3 815 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 VN1R3Q9BXE9 311 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 KRTAP1-5Q9BYS1 174 aa4.34□□□□□ -1.71
VPS13A-213ENST00000539950 TRIM43BA6NCK2 446 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 CAPN8A6NHC0 703 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 PYCARD-AS1I3L0S3 204 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 SOCS2O14508 198 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 RGS10O43665 173 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 CREB1P16220 341 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 EPHA3P29320 983 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 PLCD1P51178 756 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 ITGA8P53708 1063 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 EPHB1P54762 984 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 TIAL1Q01085 375 aaKnown RBP eCLIP4.33□□□□□ -1.72
VPS13A-213ENST00000539950 TMEM65Q6PI78 240 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 APOA5Q6Q788 366 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 IRF2BP2Q7Z5L9 587 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 RAB11FIP4Q86YS3 637 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 RAVER1Q8IY67 606 aaKnown RBP4.33□□□□□ -1.72
VPS13A-213ENST00000539950 KIAA0319LQ8IZA0 1049 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 C16orf52Q8NHV5 167 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 MAFAQ8NHW3 353 aaPredicted RBP4.33□□□□□ -1.72
VPS13A-213ENST00000539950 OSR1Q8TAX0 266 aaPredicted RBP4.33□□□□□ -1.72
VPS13A-213ENST00000539950 PIGOQ8TEQ8 1089 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 TRIM43Q96BQ3 446 aaPredicted RBP4.33□□□□□ -1.72
VPS13A-213ENST00000539950 WDYHV1Q96HA8 205 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 TMEM60Q9H2L4 133 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 SACM1LQ9NTJ5 587 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 MTMR4Q9NYA4 1195 aa4.33□□□□□ -1.72
VPS13A-213ENST00000539950 LOC102723971A0A1B0GUV8 181 aa4.32□□□□□ -1.72
VPS13A-213ENST00000539950 MBD3L4A6NDZ8 208 aaPredicted RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 MBD3L3A6NE82 208 aaPredicted RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 AGPSO00116 658 aa4.32□□□□□ -1.72
VPS13A-213ENST00000539950 CD3EAPO15446 510 aaKnown RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 PRPF3O43395 683 aaKnown RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 RRP9O43818 475 aaKnown RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 RASSF9O75901 435 aa4.32□□□□□ -1.72
VPS13A-213ENST00000539950 PRF1P14222 555 aa4.32□□□□□ -1.72
VPS13A-213ENST00000539950 ATF7P17544 494 aaPredicted RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 PTDSS1P48651 473 aaKnown RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 POLGP54098 1239 aaPredicted RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 GHRHRQ02643 423 aa4.32□□□□□ -1.72
VPS13A-213ENST00000539950 LARS2Q15031 903 aaKnown RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 CNN3Q15417 329 aaKnown RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 RBMS2Q15434 407 aaKnown RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 INSCQ1MX18 579 aa4.32□□□□□ -1.72
VPS13A-213ENST00000539950 TRIM71Q2Q1W2 868 aaKnown RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 C10orf25Q5T742 122 aa4.32□□□□□ -1.72
VPS13A-213ENST00000539950 MAP4K1Q92918 833 aa4.32□□□□□ -1.72
VPS13A-213ENST00000539950 MGAT4CQ9UBM8 478 aa4.32□□□□□ -1.72
VPS13A-213ENST00000539950 NOB1Q9ULX3 412 aaKnown RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 THRAP3Q9Y2W1 955 aaKnown RBP4.32□□□□□ -1.72
VPS13A-213ENST00000539950 LY6G6EA0A0G2JKS1 128 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 CFAP69A5D8W1 941 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 A6NNZ2 444 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms