RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 DMGDHQ9UI17 866 aaKnown RBP12.6□□□□□ -0.39
CLIP1-208ENST00000537004 L1RE1Q9UN81 338 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 PCDHB4Q9Y5E5 795 aa12.6□□□□□ -0.39
CLIP1-208ENST00000537004 TECTAO75443 2155 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 PGRMC1O00264 195 aaKnown RBP12.59□□□□□ -0.39
CLIP1-208ENST00000537004 ABLIM3O94929 683 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 OAZ2O95190 189 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 ITGB3P05106 788 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 TMEM191BP0C7N4 346 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 UNGP13051 313 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-208ENST00000537004 POLR2BP30876 1174 aaKnown RBP12.59□□□□□ -0.39
CLIP1-208ENST00000537004 MYL6P60660 151 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 ADCY1Q08828 1119 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 GLE1Q53GS7 698 aaKnown RBP12.59□□□□□ -0.39
CLIP1-208ENST00000537004 ELMSAN1Q6PJG2 1045 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 RNF19BQ6ZMZ0 732 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 HDXQ7Z353 690 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 CXorf38Q8TB03 319 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 MYADMQ96S97 322 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 TSPAN18Q96SJ8 248 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 NUP85Q9BW27 656 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 C1QTNF1Q9BXJ1 281 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 CYP4F11Q9HBI6 524 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 TMEM59LQ9UK28 342 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 CNTN6Q9UQ52 1028 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 ALG6Q9Y672 507 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 CLUHO75153 1309 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 SCN1AP35498 2009 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 H7C4K7 107 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 MAP2K7O14733 419 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 DDX3YO15523 660 aaKnown RBP12.59□□□□□ -0.39
CLIP1-208ENST00000537004 VNN2O95498 520 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 C1RP00736 705 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 TNNC2P02585 160 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 CPB1P15086 417 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 ATF2P15336 505 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 MRPS25P82663 173 aaKnown RBP12.59□□□□□ -0.39
CLIP1-208ENST00000537004 SLC7A5Q01650 507 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 POU5F1Q01860 360 aaKnown RBP12.59□□□□□ -0.39
CLIP1-208ENST00000537004 TRPC3Q13507 836 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 SGSM1Q2NKQ1 1148 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 MAP9Q49MG5 647 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 TMEM31Q5JXX7 168 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 OVOS1Q6IE37 1185 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 GET4Q7L5D6 327 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-208ENST00000537004 RASGEF1CQ8N431 466 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 RBBP8NLQ8NC74 664 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-208ENST00000537004 STIM2Q9P246 746 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 UVRAGQ9P2Y5 699 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 SIX4Q9UIU6 781 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 AGAP1Q9UPQ3 857 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 USTQ9Y2C2 406 aa12.59□□□□□ -0.39
CLIP1-208ENST00000537004 C2orf16Q68DN1 1984 aa12.58□□□□□ -0.39
CLIP1-208ENST00000537004 MYO10Q9HD67 2058 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 TMEM110-MUSTN1A8MSY1 372 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 CYB561D2O14569 222 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 PRRG1O14668 218 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 PAPLNO95428 1278 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 KRT19P08727 400 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 GNA15P30679 374 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 GBP2P32456 591 aaPredicted RBP12.58□□□□□ -0.4
CLIP1-208ENST00000537004 PLA2G4AP47712 749 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 TAF6P49848 677 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 TNNC1P63316 161 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 DCAF12L1Q5VU92 463 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 WSCD1Q658N2 575 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 CCNI2Q6ZMN8 369 aaPredicted RBP12.58□□□□□ -0.4
CLIP1-208ENST00000537004 UBR7Q8N806 425 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 OR10T2Q8NGX3 314 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 ZNF564Q8TBZ8 553 aaPredicted RBP12.58□□□□□ -0.4
CLIP1-208ENST00000537004 RSAD2Q8WXG1 361 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 ANKRD36BP1Q96IX9 119 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 KRT12Q99456 494 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 HINFPQ9BQA5 517 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 CRISPLD1Q9H336 500 aa12.58□□□□□ -0.4
CLIP1-208ENST00000537004 DNMT3BQ9UBC3 853 aaKnown RBP12.58□□□□□ -0.4
CLIP1-208ENST00000537004 KPNA7A9QM74 516 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 NRG2O14511 850 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-208ENST00000537004 GPR37L1O60883 481 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 CYP1A1P04798 512 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-208ENST00000537004 MYBL2P10244 700 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 ELF1P32519 619 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 ZXDAP98168 799 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 CENPCQ03188 943 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 MESDQ14696 234 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 NAA35Q5VZE5 725 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 OTOP3Q7RTS5 596 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 TTC9BQ8N6N2 239 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 ITFG1Q8TB96 612 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 CPA5Q8WXQ8 436 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 EDAQ92838 391 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 ACSF2Q96CM8 615 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-208ENST00000537004 RTP3Q9BQQ7 232 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 NIF3L1Q9GZT8 377 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 CNOT8Q9UFF9 292 aaKnown RBP12.57□□□□□ -0.4
CLIP1-208ENST00000537004 WDR87Q6ZQQ6 2873 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 MIF4GDA9UHW6 222 aaKnown RBP12.57□□□□□ -0.4
CLIP1-208ENST00000537004 SOAT2O75908 522 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 HNRNPA1P09651 372 aaKnown RBP eCLIP12.57□□□□□ -0.4
CLIP1-208ENST00000537004 ODC1P11926 461 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms