RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 SPTY2D1Q68D10 685 aaPredicted RBP7□□□□□ -1.29
USP28-202ENST00000535607 CENPPQ6IPU0 288 aa7□□□□□ -1.29
USP28-202ENST00000535607 C16orf59Q7L2K0 433 aa7□□□□□ -1.29
USP28-202ENST00000535607 PEX26Q7Z412 305 aa7□□□□□ -1.29
USP28-202ENST00000535607 TBC1D1Q86TI0 1168 aaPredicted RBP7□□□□□ -1.29
USP28-202ENST00000535607 RIOX2Q8IUF8 465 aa7□□□□□ -1.29
USP28-202ENST00000535607 ANKRD13AQ8IZ07 590 aa7□□□□□ -1.29
USP28-202ENST00000535607 MAGEB6Q8N7X4 407 aa7□□□□□ -1.29
USP28-202ENST00000535607 C2orf69Q8N8R5 385 aa7□□□□□ -1.29
USP28-202ENST00000535607 NETO2Q8NC67 525 aa7□□□□□ -1.29
USP28-202ENST00000535607 OR2W6PQ8NHA6 318 aa7□□□□□ -1.29
USP28-202ENST00000535607 PCDH19Q8TAB3 1148 aa7□□□□□ -1.29
USP28-202ENST00000535607 ANKS1AQ92625 1134 aa7□□□□□ -1.29
USP28-202ENST00000535607 DPF3Q92784 378 aa7□□□□□ -1.29
USP28-202ENST00000535607 PEX11GQ96HA9 241 aa7□□□□□ -1.29
USP28-202ENST00000535607 TRAPPC9Q96Q05 1148 aa7□□□□□ -1.29
USP28-202ENST00000535607 PSMB7Q99436 277 aa7□□□□□ -1.29
USP28-202ENST00000535607 YIPF4Q9BSR8 244 aa7□□□□□ -1.29
USP28-202ENST00000535607 TUBB6Q9BUF5 446 aa7□□□□□ -1.29
USP28-202ENST00000535607 CCDC28BQ9BUN5 200 aa7□□□□□ -1.29
USP28-202ENST00000535607 CELF4Q9BZC1 486 aaKnown RBP7□□□□□ -1.29
USP28-202ENST00000535607 FAM192AQ9GZU8 254 aa7□□□□□ -1.29
USP28-202ENST00000535607 RNF32Q9H0A6 362 aa7□□□□□ -1.29
USP28-202ENST00000535607 ZMYND12Q9H0C1 365 aa7□□□□□ -1.29
USP28-202ENST00000535607 VCX3BQ9H321 246 aa7□□□□□ -1.29
USP28-202ENST00000535607 PABPC3Q9H361 631 aaKnown RBP7□□□□□ -1.29
USP28-202ENST00000535607 ECT2Q9H8V3 914 aa7□□□□□ -1.29
USP28-202ENST00000535607 RXFP1Q9HBX9 757 aa7□□□□□ -1.29
USP28-202ENST00000535607 CD209Q9NNX6 404 aa7□□□□□ -1.29
USP28-202ENST00000535607 VCX3AQ9NNX9 186 aa7□□□□□ -1.29
USP28-202ENST00000535607 SLC39A2Q9NP94 309 aa7□□□□□ -1.29
USP28-202ENST00000535607 PIH1D3Q9NQM4 214 aaKnown RBP7□□□□□ -1.29
USP28-202ENST00000535607 PAPOLBQ9NRJ5 636 aaKnown RBP7□□□□□ -1.29
USP28-202ENST00000535607 USP40Q9NVE5 1235 aa7□□□□□ -1.29
USP28-202ENST00000535607 C19orf73Q9NVV2 129 aa7□□□□□ -1.29
USP28-202ENST00000535607 AIPL1Q9NZN9 384 aa7□□□□□ -1.29
USP28-202ENST00000535607 KLHL14Q9P2G3 628 aa7□□□□□ -1.29
USP28-202ENST00000535607 TTC7AQ9ULT0 858 aaPredicted RBP7□□□□□ -1.29
USP28-202ENST00000535607 SIK3Q9Y2K2 1263 aa7□□□□□ -1.29
USP28-202ENST00000535607 COQ6Q9Y2Z9 468 aa7□□□□□ -1.29
USP28-202ENST00000535607 COL4A3BPQ9Y5P4 624 aa7□□□□□ -1.29
USP28-202ENST00000535607 X6R8D5 127 aa7□□□□□ -1.29
USP28-202ENST00000535607 MYH10P35580 1976 aa7□□□□□ -1.29
USP28-202ENST00000535607 CCDC88AQ3V6T2 1871 aa7□□□□□ -1.29
USP28-202ENST00000535607 FAM205AQ6ZU69 1335 aa7□□□□□ -1.29
USP28-202ENST00000535607 MYH7BA7E2Y1 1941 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 GSG1L2A8MUP6 293 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 PDLIM1O00151 329 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 SNAP23O00161 211 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 ARNTLO00327 626 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 KLRC4O43908 158 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 RTN3O95197 1032 aaPredicted RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 GGPS1O95749 300 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 NTRK1P04629 796 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 PYGMP11217 842 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 CHN1P15882 459 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 KRT15P19012 456 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 KLRK1P26718 216 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 TMOD1P28289 359 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 SLC1A4P43007 532 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 MSH2P43246 934 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 RPS6KA3P51812 740 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 PMS2P54278 862 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 FKBP3Q00688 224 aaKnown RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 GFPT1Q06210 699 aaPredicted RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 KLC1Q07866 573 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 SEC23AQ15436 765 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 PKN1Q16512 942 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 LRRC23Q53EV4 343 aaPredicted RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 SPDYAQ5MJ70 313 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 STEAP3Q658P3 488 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 UNC13DQ70J99 1090 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 INTS8Q75QN2 995 aaKnown RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 KRT26Q7Z3Y9 468 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 ZSWIM9Q86XI8 627 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 CISD2Q8N5K1 135 aaKnown RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 CTNNBL1Q8WYA6 563 aaPredicted RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 LZICQ8WZA0 190 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 SEC14L1Q92503 715 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 USP7Q93009 1102 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 MTMR8Q96EF0 704 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 NAF1Q96HR8 494 aaKnown RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 MS4A14Q96JA4 679 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 ELAC2Q9BQ52 826 aaKnown RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 CCDC77Q9BR77 488 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 SYT17Q9BSW7 474 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 TRIM9Q9C026 710 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 TRIM4Q9C037 500 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 SLC5A4Q9NY91 659 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 RGL1Q9NZL6 768 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 PPARGC1AQ9UBK2 798 aaKnown RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 SCOCQ9UIL1 159 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 AMFRQ9UKV5 643 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 TFR2Q9UP52 801 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 YBX2Q9Y2T7 364 aaKnown RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 NOC2LQ9Y3T9 749 aaKnown RBP6.99□□□□□ -1.29
USP28-202ENST00000535607 ATAD5Q96QE3 1844 aa6.99□□□□□ -1.29
USP28-202ENST00000535607 DICER1Q9UPY3 1922 aaKnown RBP6.98□□□□□ -1.29
USP28-202ENST00000535607 OR14I1A6ND48 311 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 TTC36A6NLP5 189 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms