RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SMTNL1A8MU46 457 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 ARNTLO00327 626 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 ZNF263O14978 683 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 XPO1O14980 1071 aaKnown RBP20.95■□□□□ 0.94
CPSF1-209ENST00000532725 CHADO15335 359 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 PDE6CP51160 858 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 BCAT1P54687 386 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 SLC8A3P57103 927 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 ZXDBP98169 803 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 BST2Q10589 180 aaKnown RBP20.95■□□□□ 0.94
CPSF1-209ENST00000532725 IQCB1Q15051 598 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 STILQ15468 1287 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 SIX5Q8N196 739 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 SLC35F5Q8WV83 523 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 IRF7Q92985 503 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 KIF9Q9HAQ2 790 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 CA14Q9ULX7 337 aa20.95■□□□□ 0.94
CPSF1-209ENST00000532725 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.95■□□□□ 0.94
CPSF1-209ENST00000532725 FOXN3O00409 490 aaPredicted RBP20.94■□□□□ 0.94
CPSF1-209ENST00000532725 CKMP06732 381 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 TPM2P07951 284 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 ATP1A3P13637 1013 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 SLC7A9P82251 487 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 ZSCAN23Q3MJ62 389 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 YAF2Q8IY57 180 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 ANKRD20A12PQ8NF67 263 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 RIN3Q8TB24 985 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 ZNF606Q8WXB4 792 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 DNASE1L2Q92874 299 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 NAA15Q9BXJ9 866 aaKnown RBP20.94■□□□□ 0.94
CPSF1-209ENST00000532725 ACP6Q9NPH0 428 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 PLCB1Q9NQ66 1216 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 TLR8Q9NR97 1041 aaKnown RBP20.94■□□□□ 0.94
CPSF1-209ENST00000532725 ARHGAP26Q9UNA1 814 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 ZDBF2Q9HCK1 2354 aa20.94■□□□□ 0.94
CPSF1-209ENST00000532725 NUP210Q8TEM1 1887 aaPredicted RBP20.93■□□□□ 0.94
CPSF1-209ENST00000532725 CYP26A1O43174 497 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 TCF3P15923 654 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 PLA2G4AP47712 749 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 TUBP50607 506 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 ARHGAP29Q52LW3 1261 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 HECTD3Q5T447 861 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 CCDC186Q7Z3E2 898 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 FBXL6Q8N531 539 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 KCTD13Q8WZ19 329 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 FAM83CQ9BQN1 747 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 LSM14BQ9BX40 385 aaKnown RBP20.93■□□□□ 0.94
CPSF1-209ENST00000532725 CCSER2Q9H7U1 834 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 NMUR1Q9HB89 426 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 ARHGEF3Q9NR81 526 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 OSER1Q9NX31 292 aa20.93■□□□□ 0.94
CPSF1-209ENST00000532725 LGALS16A8MUM7 142 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 COCHO43405 550 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 GABBR2O75899 941 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 SETSIPP0DME0 302 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 UCHL3P15374 230 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 CLCN1P35523 988 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 USP8P40818 1118 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 TKTL1P51854 596 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 STARD6P59095 220 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 NFKBIBQ15653 356 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 ZNF77Q15935 545 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 FKBP15Q5T1M5 1219 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 PM20D1Q6GTS8 502 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 SCD5Q86SK9 330 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 FAM71AQ8IYT1 594 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 SECISBP2LQ93073 1101 aaKnown RBP20.92■□□□□ 0.94
CPSF1-209ENST00000532725 ZFYVE19Q96K21 471 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 GKN1Q9NS71 199 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 THG1LQ9NWX6 298 aaKnown RBP20.92■□□□□ 0.94
CPSF1-209ENST00000532725 SIK3Q9Y2K2 1263 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 FHOD1Q9Y613 1164 aa20.92■□□□□ 0.94
CPSF1-209ENST00000532725 A0A1W2PQH9 124 aa20.91■□□□□ 0.94
CPSF1-209ENST00000532725 SHISA7A6NL88 538 aa20.91■□□□□ 0.94
CPSF1-209ENST00000532725 GPD2P43304 727 aa20.91■□□□□ 0.94
CPSF1-209ENST00000532725 KLK7P49862 253 aa20.91■□□□□ 0.94
CPSF1-209ENST00000532725 PLCB2Q00722 1185 aa20.91■□□□□ 0.94
CPSF1-209ENST00000532725 PRKCQQ04759 706 aa20.91■□□□□ 0.94
CPSF1-209ENST00000532725 DRAP1Q14919 205 aaPredicted RBP20.91■□□□□ 0.94
CPSF1-209ENST00000532725 MLF2Q15773 248 aaPredicted RBP20.91■□□□□ 0.94
CPSF1-209ENST00000532725 PMF1Q6P1K2 205 aa20.91■□□□□ 0.94
CPSF1-209ENST00000532725 ZNF276Q8N554 614 aa20.91■□□□□ 0.94
CPSF1-209ENST00000532725 SH3RF2Q8TEC5 729 aa20.91■□□□□ 0.94
CPSF1-209ENST00000532725 DDX23Q9BUQ8 820 aaKnown RBP20.91■□□□□ 0.94
CPSF1-209ENST00000532725 CYLDQ9NQC7 956 aa20.91■□□□□ 0.94
CPSF1-209ENST00000532725 HEBP1Q9NRV9 189 aa20.91■□□□□ 0.94
CPSF1-209ENST00000532725 F5P12259 2224 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 PATJQ8NI35 1801 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 M0QYV0 167 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 LEFTY2O00292 366 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 MED7O43513 233 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 TBX18O95935 607 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 RFX1P22670 979 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 GNA15P30679 374 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 PSEN1P49768 467 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 CLCN5P51795 746 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 MLLT6P55198 1093 aaPredicted RBP20.9■□□□□ 0.94
CPSF1-209ENST00000532725 UBXN1Q04323 297 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 USP4Q13107 963 aa20.9■□□□□ 0.94
CPSF1-209ENST00000532725 MEA1Q16626 185 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms