RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 ANKRD35Q8N283 1001 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 SLC16A11Q8NCK7 471 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 MBD3L2Q8NHZ7 208 aaPredicted RBP3.44□□□□□ -1.86
CD44-234ENST00000531873 RUBCNQ92622 972 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 PPP2R3CQ969Q6 453 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 NACC2Q96BF6 587 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 GRAMD1AQ96CP6 724 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 ZDHHC12Q96GR4 267 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 ZNF668Q96K58 619 aaPredicted RBP3.44□□□□□ -1.86
CD44-234ENST00000531873 ZBTB45Q96K62 511 aaPredicted RBP3.44□□□□□ -1.86
CD44-234ENST00000531873 SEC62Q99442 399 aaKnown RBP3.44□□□□□ -1.86
CD44-234ENST00000531873 GPR87Q9BY21 358 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 UBN1Q9NPG3 1134 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 G6PC2Q9NQR9 355 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 TMOD4Q9NZQ9 345 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 KCNE5Q9UJ90 142 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 RIMKLBQ9ULI2 386 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 TMEM98Q9Y2Y6 226 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 SNX14Q9Y5W7 946 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 SPATA31A3Q5VYP0 1347 aa3.44□□□□□ -1.86
CD44-234ENST00000531873 PATE3B3GLJ2 98 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 DIRC3C9JPN6 131 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 C1QTNF3-AMACRE9PGA6 284 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 K7ESM1 405 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 MATN3O15232 486 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 HOXC11O43248 304 aaPredicted RBP3.43□□□□□ -1.86
CD44-234ENST00000531873 RGS10O43665 173 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 PRICKLE3O43900 615 aaPredicted RBP3.43□□□□□ -1.86
CD44-234ENST00000531873 CCNT2O60583 730 aaKnown RBP3.43□□□□□ -1.86
CD44-234ENST00000531873 RPS6KA4O75676 772 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 RPP40O75818 363 aaKnown RBP3.43□□□□□ -1.86
CD44-234ENST00000531873 SOAT2O75908 522 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 MBD4O95243 580 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 PLATP00750 562 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 ERBB2P04626 1255 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 CFIP05156 583 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 PRKCBP05771 671 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 SRGAP2BP0DMP2 458 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 CAPN3P20807 821 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 UQCRC1P31930 480 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 MAGEA10P43363 369 aaPredicted RBP3.43□□□□□ -1.86
CD44-234ENST00000531873 MAN2A2P49641 1150 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 PAPOLAP51003 745 aaKnown RBP3.43□□□□□ -1.86
CD44-234ENST00000531873 PGDP52209 483 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 ACTR2P61160 394 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 FAM189BP81408 668 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 SATB1Q01826 763 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 TLE2Q04725 743 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 DYRK1AQ13627 763 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 HLXQ14774 488 aaPredicted RBP3.43□□□□□ -1.86
CD44-234ENST00000531873 CYP2A13Q16696 494 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 GEN1Q17RS7 908 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 HYIQ5T013 277 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 CERCAMQ5T4B2 595 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 WDR78Q5VTH9 848 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 RINT1Q6NUQ1 792 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 FAM180BQ6P0A1 224 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 NFRKBQ6P4R8 1299 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 RRAGAQ7L523 313 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 RAB11FIP2Q7L804 512 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 GDF7Q7Z4P5 450 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 CLNKQ7Z7G1 428 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 CCDC117Q8IWD4 279 aaPredicted RBP3.43□□□□□ -1.86
CD44-234ENST00000531873 SLC15A3Q8IY34 581 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 COLGALT2Q8IYK4 626 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 NRSN1Q8IZ57 195 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 SPARTQ8N0X7 666 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 SUN3Q8TAQ9 357 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 CSGALNACT1Q8TDX6 532 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 AFG1LQ8WV93 481 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 ATG4AQ8WYN0 398 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 HTRA1Q92743 480 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 TMEM125Q96AQ2 219 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 TWNKQ96RR1 684 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 OSBPL9Q96SU4 736 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 VPS16Q9H269 839 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 ZHX3Q9H4I2 956 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 RASSF1Q9NS23 344 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 TMEM160Q9NX00 188 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 SWAP70Q9UH65 585 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 SERTAD3Q9UJW9 196 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 NEU2Q9Y3R4 380 aa3.43□□□□□ -1.86
CD44-234ENST00000531873 COL15A1P39059 1388 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 PNMA6EA0A0J9YXQ4 647 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 GXYLT2A0PJZ3 443 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 NPEPPSL1A6NEC2 478 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 FAM90A20PA6NIJ5 464 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 A6NLC8 198 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 ZAR1LA6NP61 321 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 PRSS47A8MTI9 375 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 GOLGA6L6A8MZA4 724 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 TRIM24O15164 1050 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 PPP6R2O75170 966 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 CYP21A2P08686 494 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 ATP1A3P13637 1013 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 COMTP21964 271 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 RBL1P28749 1068 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 CD6P30203 668 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 PDE6CP51160 858 aa3.42□□□□□ -1.86
CD44-234ENST00000531873 NR1H2P55055 460 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms