RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 IRF2BP2Q7Z5L9 587 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 NOP9Q86U38 636 aaKnown RBP15.25■□□□□ 0.03
CPSF1-206ENST00000531480 MON1AQ86VX9 555 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 WDTC1Q8N5D0 677 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 UBA3Q8TBC4 463 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 ING5Q8WYH8 240 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 KHSRPQ92945 711 aaKnown RBP eCLIP15.25■□□□□ 0.03
CPSF1-206ENST00000531480 NXPE3Q969Y0 559 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 RPGRIP1Q96KN7 1286 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 ZSWIM3Q96MP5 696 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 ASB16Q96NS5 453 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 SLITRK1Q96PX8 696 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 SYT11Q9BT88 431 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 SLC4A5Q9BY07 1137 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 ATXN3LQ9H3M9 355 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 CD320Q9NPF0 282 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 AIPL1Q9NZN9 384 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 CYTH4Q9UIA0 394 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 TRIOO75962 3097 aa15.25■□□□□ 0.03
CPSF1-206ENST00000531480 GFPT2O94808 682 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 OAS1P00973 400 aaKnown RBP15.24■□□□□ 0.03
CPSF1-206ENST00000531480 GYPCP04921 128 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 COL9A1P20849 921 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 FCARP24071 287 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 GBP2P32456 591 aaPredicted RBP15.24■□□□□ 0.03
CPSF1-206ENST00000531480 PDE6CP51160 858 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 HTR4Q13639 388 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 ARID5BQ14865 1188 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 ARHGAP15Q53QZ3 475 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 CACNA2D4Q7Z3S7 1137 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 TMEM110Q86TL2 294 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 VSTM4Q8IW00 320 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 OLIG1Q8TAK6 271 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 SYN2Q92777 582 aaPredicted RBP15.24■□□□□ 0.03
CPSF1-206ENST00000531480 FBXO32Q969P5 355 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 GCNAQ96QF7 691 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 SLC46A2Q9BY10 475 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 EPHX3Q9H6B9 360 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 CNGB3Q9NQW8 809 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 TRPM5Q9NZQ8 1165 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 CAPN11Q9UMQ6 739 aa15.24■□□□□ 0.03
CPSF1-206ENST00000531480 LRRC53A6NM62 1247 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 LSM8O95777 96 aaKnown RBP15.23■□□□□ 0.03
CPSF1-206ENST00000531480 TCF3P15923 654 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 CHRNB2P17787 502 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 SSTR3P32745 418 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-206ENST00000531480 PRKCIP41743 596 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 PGFP49763 221 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 TKTL1P51854 596 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 CYP4F8P98187 520 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 FMO1Q01740 532 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 CDR2Q01850 454 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 ZNF268Q14587 947 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-206ENST00000531480 FAM78AQ5JUQ0 283 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 GPR158Q5T848 1215 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 E4F1Q66K89 784 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-206ENST00000531480 SPECC1LQ69YQ0 1117 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 TXNDC8Q6A555 127 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 SCD5Q86SK9 330 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 CMTM8Q8IZV2 173 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 GJD3Q8N144 294 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 MRPS31Q92665 395 aaKnown RBP15.23■□□□□ 0.03
CPSF1-206ENST00000531480 SMARCD2Q92925 531 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 MCRS1Q96EZ8 462 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 OBP2AQ9NY56 170 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 GMIPQ9P107 970 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 IGSF9Q9P2J2 1179 aa15.23■□□□□ 0.03
CPSF1-206ENST00000531480 C2orf78A6NCI8 922 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 FAM86C2PA6NEL3 165 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 ECI2O75521 394 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 ZBED1O96006 694 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 CYP1A1P04798 512 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-206ENST00000531480 CCDC172P0C7W6 258 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 FERP16591 822 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 KRT9P35527 623 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 ACADSBP45954 432 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 PSEN1P49768 467 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 ZBED6P86452 979 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 PDCLQ13371 301 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 KLHDC10Q6PID8 442 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 MTSS1LQ765P7 747 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 ZSCAN18Q8TBC5 510 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-206ENST00000531480 IRGQQ8WZA9 623 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 FGF14Q92915 247 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 ELSPBP1Q96BH3 223 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 NUCKS1Q9H1E3 243 aaKnown RBP15.22■□□□□ 0.03
CPSF1-206ENST00000531480 KCNK12Q9HB15 430 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 TLR8Q9NR97 1041 aaKnown RBP15.22■□□□□ 0.03
CPSF1-206ENST00000531480 OSER1Q9NX31 292 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 CLIC5Q9NZA1 410 aa15.22■□□□□ 0.03
CPSF1-206ENST00000531480 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.22■□□□□ 0.03
CPSF1-206ENST00000531480 FBXO21O94952 628 aa15.21■□□□□ 0.03
CPSF1-206ENST00000531480 MMEP08473 750 aa15.21■□□□□ 0.03
CPSF1-206ENST00000531480 SP100P23497 879 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-206ENST00000531480 HNRNPH3P31942 346 aaKnown RBP15.21■□□□□ 0.03
CPSF1-206ENST00000531480 GABRB2P47870 512 aa15.21■□□□□ 0.03
CPSF1-206ENST00000531480 DAOAP59103 153 aa15.21■□□□□ 0.03
CPSF1-206ENST00000531480 NOMO3P69849 1222 aa15.21■□□□□ 0.03
CPSF1-206ENST00000531480 SLC7A9P82251 487 aa15.21■□□□□ 0.03
CPSF1-206ENST00000531480 ADIGQ0VDE8 80 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms