RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 CCDC184Q52MB2 194 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 PDCD4Q53EL6 469 aaKnown RBP6.08□□□□□ -1.44
CD44-231ENST00000531110 LCE5AQ5TCM9 118 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 FBXO38Q6PIJ6 1188 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 TMCO3Q6UWJ1 677 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 CCBE1Q6UXH8 406 aaPredicted RBP6.08□□□□□ -1.44
CD44-231ENST00000531110 ARMC9Q7Z3E5 817 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 UBE3BQ7Z3V4 1068 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.08□□□□□ -1.44
CD44-231ENST00000531110 TMEM110Q86TL2 294 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 DZIP1Q86YF9 867 aaKnown RBP6.08□□□□□ -1.44
CD44-231ENST00000531110 SYNE4Q8N205 404 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 MAGEB6Q8N7X4 407 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 MSANTD4Q8NCY6 345 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 TRIM58Q8NG06 486 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 IRGQQ8WZA9 623 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 SMARCE1Q969G3 411 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 ZKSCAN4Q969J2 545 aaPredicted RBP6.08□□□□□ -1.44
CD44-231ENST00000531110 GCC1Q96CN9 775 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 ZMAT2Q96NC0 199 aaKnown RBP6.08□□□□□ -1.44
CD44-231ENST00000531110 CCDC68Q9H2F9 335 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 ZWILCHQ9H900 591 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 ZNF304Q9HCX3 659 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 AKIP1Q9NQ31 210 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 GPRC5BQ9NZH0 403 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 KLHL42Q9P2K6 505 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 TUBGCP4Q9UGJ1 667 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 ADAM21Q9UKJ8 722 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 CFAP45Q9UL16 551 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 ZDHHC8Q9ULC8 765 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 CARD8Q9Y2G2 431 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 PCDHB2Q9Y5E7 798 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 HS3ST4Q9Y661 456 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 PRDM15P57071 1507 aaPredicted RBP6.08□□□□□ -1.44
CD44-231ENST00000531110 RTEL1-TNFRSF6BF6WH68 1400 aa6.08□□□□□ -1.44
CD44-231ENST00000531110 ANKRD30AQ9BXX3 1397 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 KIF7Q2M1P5 1343 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 THOC2Q8NI27 1593 aaKnown RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 REREQ9P2R6 1566 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 TCRBV7S2A1N4TA0A589 114 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 H0YC42 278 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 F2RL2O00254 374 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 KIAA0391O15091 583 aaKnown RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 NARSO43776 548 aaKnown RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 FAM20BO75063 409 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 ATP6V1G1O75348 118 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 LUC7L3O95232 432 aaKnown RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 EIF2S1P05198 315 aaKnown RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 SLC6A4P31645 630 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 ARHGAP25P42331 645 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 PSMC4P43686 418 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 MAP2K6P52564 334 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 TPD52P55327 224 aaPredicted RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 NLRP5P59047 1200 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 MINDY4Q4G0A6 757 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 FNDC7Q5VTL7 733 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 ADALQ6DHV7 355 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 THOC7Q6I9Y2 204 aaKnown RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 NCAPH2Q6IBW4 605 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 BEND5Q7L4P6 421 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 FAM90A1Q86YD7 464 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 DENND1CQ8IV53 801 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 TPH2Q8IWU9 490 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 RAVER1Q8IY67 606 aaKnown RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 AMER2Q8N7J2 671 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 TRIML1Q8N9V2 468 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 ZBTB8BQ8NAP8 495 aaPredicted RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 NEK11Q8NG66 645 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 PARD3BQ8TEW8 1205 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 CTNNBL1Q8WYA6 563 aaPredicted RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 RAB24Q969Q5 203 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 CLIP3Q96DZ5 547 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 VMP1Q96GC9 406 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 NEK1Q96PY6 1258 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 TAAR9Q96RI9 348 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 PNKPQ96T60 521 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 VRK1Q99986 396 aaPredicted RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 EIF2AQ9BY44 585 aaKnown RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 KRTAP4-9Q9BYQ8 210 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 GSTO2Q9H4Y5 243 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 KIF9Q9HAQ2 790 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 DDX21Q9NR30 783 aaKnown RBP eCLIP6.07□□□□□ -1.44
CD44-231ENST00000531110 HELLSQ9NRZ9 838 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 TMEM74BQ9NUR3 256 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 KCNE5Q9UJ90 142 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 SCAF8Q9UPN6 1271 aaKnown RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 NEU2Q9Y3R4 380 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 USP15Q9Y4E8 981 aaPredicted RBP6.07□□□□□ -1.44
CD44-231ENST00000531110 ABCC9O60706 1549 aa6.07□□□□□ -1.44
CD44-231ENST00000531110 A0A1B0GTW7 788 aa6.06□□□□□ -1.44
CD44-231ENST00000531110 CLRN2A0PK11 232 aa6.06□□□□□ -1.44
CD44-231ENST00000531110 SRRM3A6NNA2 597 aaPredicted RBP6.06□□□□□ -1.44
CD44-231ENST00000531110 TTC34A8MYJ7 566 aa6.06□□□□□ -1.44
CD44-231ENST00000531110 EIF3FO00303 357 aaPredicted RBP6.06□□□□□ -1.44
CD44-231ENST00000531110 ZNF185O15231 689 aa6.06□□□□□ -1.44
CD44-231ENST00000531110 RNF8O76064 485 aa6.06□□□□□ -1.44
CD44-231ENST00000531110 TMCC1O94876 653 aa6.06□□□□□ -1.44
CD44-231ENST00000531110 ZNF202O95125 648 aa6.06□□□□□ -1.44
CD44-231ENST00000531110 RPSAP08865 295 aaKnown RBP6.06□□□□□ -1.44
CD44-231ENST00000531110 C6P13671 934 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms