RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 DMWDQ09019 674 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 IFRD2Q12894 506 aaPredicted RBP11.29□□□□□ -0.6
CD44-227ENST00000528086 PON2Q15165 354 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 DCAF17Q5H9S7 520 aaPredicted RBP11.29□□□□□ -0.6
CD44-227ENST00000528086 TMEM196Q5HYL7 178 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 BHLHA9Q7RTU4 235 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 SCD5Q86SK9 330 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 TTC30AQ86WT1 665 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 RALGPS2Q86X27 583 aaPredicted RBP11.29□□□□□ -0.6
CD44-227ENST00000528086 SFTPA1Q8IWL2 248 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 YAF2Q8IY57 180 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 OSCP1Q8WVF1 389 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 CYFIP2Q96F07 1278 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 CEP63Q96MT8 703 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 NELL2Q99435 816 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 NT5C1AQ9BXI3 368 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 C8orf33Q9H7E9 229 aaPredicted RBP11.29□□□□□ -0.6
CD44-227ENST00000528086 KIF9Q9HAQ2 790 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 SMPD4Q9NXE4 827 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 TRPM5Q9NZQ8 1165 aa11.29□□□□□ -0.6
CD44-227ENST00000528086 ARMCX3Q9UH62 379 aaPredicted RBP11.29□□□□□ -0.6
CD44-227ENST00000528086 PSMA7O14818 248 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 CYP26A1O43174 497 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 P4HA1P13674 534 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 ANXA13P27216 316 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 GJA4P35212 333 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 OPRD1P41143 372 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 KPNA1P52294 538 aaPredicted RBP11.28□□□□□ -0.6
CD44-227ENST00000528086 MARSP56192 900 aaKnown RBP11.28□□□□□ -0.6
CD44-227ENST00000528086 PLCB2Q00722 1185 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 SATB1Q01826 763 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 CUL2Q13617 745 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 ITPRIPL2Q3MIP1 535 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 TCERG1LQ5VWI1 586 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 DPY19L2P1Q6NXN4 242 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 ARHGEF19Q8IW93 802 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 CSGALNACT1Q8TDX6 532 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 TFAP2BQ92481 460 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 FBXO32Q969P5 355 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 CCDC34Q96HJ3 373 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 FAXDC2Q96IV6 333 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 KREMEN1Q96MU8 473 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 TSG101Q99816 390 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 MED10Q9BTT4 135 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 ECT2Q9H8V3 914 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 SPATA6Q9NWH7 488 aaPredicted RBP11.28□□□□□ -0.6
CD44-227ENST00000528086 CPQQ9Y646 472 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 USP3Q9Y6I4 520 aa11.28□□□□□ -0.6
CD44-227ENST00000528086 K7ESF4 209 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 TRDMT1O14717 391 aaKnown RBP11.27□□□□□ -0.61
CD44-227ENST00000528086 RTN3O95197 1032 aaPredicted RBP11.27□□□□□ -0.61
CD44-227ENST00000528086 EGFP01133 1207 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 FAM200BP0CF97 657 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 PFKLP17858 780 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 RFX1P22670 979 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 GALK1P51570 392 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 KIF11P52732 1056 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 APBA1Q02410 837 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 LRMPQ12912 555 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 PKDCCQ504Y2 493 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 ARHGAP17Q68EM7 881 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 C12orf40Q86WS4 652 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 ADGRG2Q8IZP9 1017 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 SUMF1Q8NBK3 374 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 ZBTB44Q8NCP5 570 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 NDRG1Q92597 394 aaKnown RBP11.27□□□□□ -0.61
CD44-227ENST00000528086 JAKMIP2Q96AA8 810 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 TMEM176AQ96HP8 235 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 SRRTQ9BXP5 876 aaKnown RBP11.27□□□□□ -0.61
CD44-227ENST00000528086 DUSP16Q9BY84 665 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 CLSTN2Q9H4D0 955 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 DUS2Q9NX74 493 aaKnown RBP11.27□□□□□ -0.61
CD44-227ENST00000528086 SCML2Q9UQR0 700 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 SDK1Q7Z5N4 2213 aa11.27□□□□□ -0.61
CD44-227ENST00000528086 SPTBN4Q9H254 2564 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 A0A1W2PQH9 124 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 MDM4O15151 490 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 GFRA3O60609 400 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 LILRB5O75023 590 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 ABL1P00519 1130 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 CYP17A1P05093 508 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 MAGEA9P43362 315 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 PPP3CCP48454 512 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 ZNF132P52740 706 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 CSTF1Q05048 431 aaKnown RBP11.26□□□□□ -0.61
CD44-227ENST00000528086 KCNH2Q12809 1159 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 PAK1Q13153 545 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 PDGFRLQ15198 375 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 DPCR1Q3MIW9 517 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 RAB41Q5JT25 222 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 RHBDF2Q6PJF5 856 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 PHTF2Q8N3S3 785 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 TRIML1Q8N9V2 468 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 GPT2Q8TD30 523 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 OVCA2Q8WZ82 227 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 MSANTD3Q96H12 275 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 HEXIM2Q96MH2 286 aaKnown RBP11.26□□□□□ -0.61
CD44-227ENST00000528086 SLITRK1Q96PX8 696 aa11.26□□□□□ -0.61
CD44-227ENST00000528086 KLF16Q9BXK1 252 aaPredicted RBP11.26□□□□□ -0.61
CD44-227ENST00000528086 GTPBP4Q9BZE4 634 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms