RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 WDR72Q3MJ13 1102 aa7□□□□□ -1.29
CD44-221ENST00000526000 FOXD4L6Q3SYB3 417 aaPredicted RBP7□□□□□ -1.29
CD44-221ENST00000526000 CFAP221Q4G0U5 840 aa7□□□□□ -1.29
CD44-221ENST00000526000 EOGTQ5NDL2 527 aa7□□□□□ -1.29
CD44-221ENST00000526000 LYSMD4Q5XG99 296 aa7□□□□□ -1.29
CD44-221ENST00000526000 VSTM1Q6UX27 236 aa7□□□□□ -1.29
CD44-221ENST00000526000 FOXD4L3Q6VB84 417 aaPredicted RBP7□□□□□ -1.29
CD44-221ENST00000526000 TPGS1Q6ZTW0 290 aa7□□□□□ -1.29
CD44-221ENST00000526000 SYT12Q8IV01 421 aa7□□□□□ -1.29
CD44-221ENST00000526000 BBS7Q8IWZ6 715 aa7□□□□□ -1.29
CD44-221ENST00000526000 CCDC65Q8IXS2 484 aa7□□□□□ -1.29
CD44-221ENST00000526000 RGL4Q8IZJ4 473 aa7□□□□□ -1.29
CD44-221ENST00000526000 KDF1Q8NAX2 398 aaPredicted RBP7□□□□□ -1.29
CD44-221ENST00000526000 OLIG1Q8TAK6 271 aa7□□□□□ -1.29
CD44-221ENST00000526000 MYCBPAPQ8TBZ2 947 aa7□□□□□ -1.29
CD44-221ENST00000526000 WHAMMQ8TF30 809 aa7□□□□□ -1.29
CD44-221ENST00000526000 ZCCHC14Q8WYQ9 949 aaKnown RBP7□□□□□ -1.29
CD44-221ENST00000526000 ZNF516Q92618 1163 aa7□□□□□ -1.29
CD44-221ENST00000526000 BHMTQ93088 406 aa7□□□□□ -1.29
CD44-221ENST00000526000 FBXO32Q969P5 355 aa7□□□□□ -1.29
CD44-221ENST00000526000 JAKMIP2Q96AA8 810 aa7□□□□□ -1.29
CD44-221ENST00000526000 HVCN1Q96D96 273 aa7□□□□□ -1.29
CD44-221ENST00000526000 FUBP3Q96I24 572 aaKnown RBP eCLIP7□□□□□ -1.29
CD44-221ENST00000526000 SPACA7Q96KW9 195 aa7□□□□□ -1.29
CD44-221ENST00000526000 SPATA17Q96L03 361 aa7□□□□□ -1.29
CD44-221ENST00000526000 TRIM9Q9C026 710 aa7□□□□□ -1.29
CD44-221ENST00000526000 CCSER2Q9H7U1 834 aa7□□□□□ -1.29
CD44-221ENST00000526000 CD93Q9NPY3 652 aa7□□□□□ -1.29
CD44-221ENST00000526000 HSPBP1Q9NZL4 362 aa7□□□□□ -1.29
CD44-221ENST00000526000 SEL1LQ9UBV2 794 aa7□□□□□ -1.29
CD44-221ENST00000526000 STK17AQ9UEE5 414 aa7□□□□□ -1.29
CD44-221ENST00000526000 NUDT5Q9UKK9 219 aa7□□□□□ -1.29
CD44-221ENST00000526000 CYP8B1Q9UNU6 501 aa7□□□□□ -1.29
CD44-221ENST00000526000 LHX6Q9UPM6 363 aa7□□□□□ -1.29
CD44-221ENST00000526000 WASF3Q9UPY6 502 aa7□□□□□ -1.29
CD44-221ENST00000526000 SH3BP1Q9Y3L3 701 aa7□□□□□ -1.29
CD44-221ENST00000526000 SRPRBQ9Y5M8 271 aaKnown RBP7□□□□□ -1.29
CD44-221ENST00000526000 RAD54BQ9Y620 910 aa7□□□□□ -1.29
CD44-221ENST00000526000 ZNF638Q14966 1978 aaKnown RBP7□□□□□ -1.29
CD44-221ENST00000526000 THADAQ6YHU6 1953 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 ASCC3Q8N3C0 2202 aaKnown RBP6.99□□□□□ -1.29
CD44-221ENST00000526000 TAF4O00268 1085 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 SLC9A3R1O14745 358 aaPredicted RBP6.99□□□□□ -1.29
CD44-221ENST00000526000 TNFRSF10BO14763 440 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 TRIM66O15016 1216 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 MDM4O15151 490 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 COCHO43405 550 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 SH3BP5O60239 455 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 TULP3O75386 442 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 ADH1CP00326 375 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 GABRG2P18507 467 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 HOXD13P35453 343 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 TXLNAP40222 546 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 TNFRSF4P43489 277 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 KIR2DL1P43626 348 aaPredicted RBP6.99□□□□□ -1.29
CD44-221ENST00000526000 CASP4P49662 377 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 TNNC1P63316 161 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 GAD2Q05329 585 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 GFPT1Q06210 699 aaPredicted RBP6.99□□□□□ -1.29
CD44-221ENST00000526000 ZNF33AQ06730 810 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 LMAN2Q12907 356 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 SURF1Q15526 300 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 MAPRE1Q15691 268 aaKnown RBP6.99□□□□□ -1.29
CD44-221ENST00000526000 C10orf76Q5T2E6 689 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 BTBD8Q5XKL5 378 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 EGFLAMQ63HQ2 1017 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 LRSAM1Q6UWE0 723 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 SCARA5Q6ZMJ2 495 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 CCDC73Q6ZRK6 1079 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 DPH6Q7L8W6 267 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 BRAPQ7Z569 592 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 ACOT1Q86TX2 421 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 C11orf74Q86VG3 221 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 MARCH9Q86YJ5 346 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 MIB1Q86YT6 1006 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 NUP93Q8N1F7 819 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 HDDC3Q8N4P3 179 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 ZNF513Q8N8E2 541 aaPredicted RBP6.99□□□□□ -1.29
CD44-221ENST00000526000 TRIML1Q8N9V2 468 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 CCDC26Q8TAB7 109 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 GATA6Q92908 595 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 C8orf48Q96LL4 319 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 SLITRK1Q96PX8 696 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 USP28Q96RU2 1077 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 TMEM121BQ9BXQ6 578 aaPredicted RBP6.99□□□□□ -1.29
CD44-221ENST00000526000 NACA2Q9H009 215 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 BLZF1Q9H2G9 400 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 SMYD3Q9H7B4 428 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 PLK2Q9NYY3 685 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 GMIPQ9P107 970 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 DEC1Q9P2X7 70 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 PILRBQ9UKJ0 227 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 HCN2Q9UL51 889 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 SLC6A14Q9UN76 642 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 USP24Q9UPU5 2620 aa6.99□□□□□ -1.29
CD44-221ENST00000526000 MYOFQ9NZM1 2061 aa6.98□□□□□ -1.29
CD44-221ENST00000526000 GOLGA8CPA6NN73 597 aa6.98□□□□□ -1.29
CD44-221ENST00000526000 ZBTB24O43167 697 aaPredicted RBP6.98□□□□□ -1.29
CD44-221ENST00000526000 OPHN1O60890 802 aa6.98□□□□□ -1.29
CD44-221ENST00000526000 BEST1O76090 585 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms