RNA–Protein interactions for RNA: ENST00000523427.1

PVT1-219, Transcript of Pvt1 oncogene, human

TSL 3 BASIC

Gene PVT1, Length 938 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-219	ENST00000523427	ENG	P17813	658 aa		27.58	■■■□□ 2.01
PVT1-219	ENST00000523427	LYSMD4	Q5XG99	296 aa		27.58	■■■□□ 2.01
PVT1-219	ENST00000523427	SYT12	Q8IV01	421 aa		27.58	■■■□□ 2.01
PVT1-219	ENST00000523427	GTPBP2	Q9BX10	602 aa	Known RBP	27.58	■■■□□ 2.01
PVT1-219	ENST00000523427	NXF1	Q9UBU9	619 aa	Known RBP	27.58	■■■□□ 2.01
PVT1-219	ENST00000523427	EVL	Q9UI08	416 aa	Predicted RBP	27.58	■■■□□ 2.01
PVT1-219	ENST00000523427		A8MXQ7	604 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	ADAM23	O75077	832 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	ITPKA	P23677	461 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	YWHAQ	P27348	245 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	WAS	P42768	502 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	KIR2DL1	P43626	348 aa	Predicted RBP	27.57	■■■□□ 2
PVT1-219	ENST00000523427	CYP2J2	P51589	502 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	MAP7D1	Q3KQU3	841 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	KDF1	Q8NAX2	398 aa	Predicted RBP	27.57	■■■□□ 2
PVT1-219	ENST00000523427	FBXO32	Q969P5	355 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	USP28	Q96RU2	1077 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	B3GNT5	Q9BYG0	378 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	ELOVL4	Q9GZR5	314 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	SLC32A1	Q9H598	525 aa		27.57	■■■□□ 2
PVT1-219	ENST00000523427	ZFYVE26	Q68DK2	2539 aa		27.56	■■■□□ 2
PVT1-219	ENST00000523427	SPAAR	A0A1B0GVQ0	90 aa		27.56	■■■□□ 2
PVT1-219	ENST00000523427	CLIC2	O15247	247 aa		27.56	■■■□□ 2
PVT1-219	ENST00000523427	HYAL3	O43820	417 aa	Predicted RBP	27.56	■■■□□ 2
PVT1-219	ENST00000523427	PDC	P20941	246 aa		27.56	■■■□□ 2
PVT1-219	ENST00000523427	HOXD13	P35453	343 aa		27.56	■■■□□ 2
PVT1-219	ENST00000523427	EIF2D	P41214	584 aa	Known RBP	27.56	■■■□□ 2
PVT1-219	ENST00000523427	ATXN3	P54252	364 aa	Predicted RBP	27.56	■■■□□ 2
PVT1-219	ENST00000523427	SNRNP35	Q16560	246 aa	Known RBP	27.56	■■■□□ 2
PVT1-219	ENST00000523427	DDX42	Q86XP3	938 aa	Known RBP eCLIP	27.56	■■■□□ 2
PVT1-219	ENST00000523427	NUP93	Q8N1F7	819 aa		27.56	■■■□□ 2
PVT1-219	ENST00000523427	KIAA1586	Q9HCI6	787 aa		27.56	■■■□□ 2
PVT1-219	ENST00000523427	TBC1D14	Q9P2M4	693 aa		27.56	■■■□□ 2
PVT1-219	ENST00000523427	SH3BP1	Q9Y3L3	701 aa		27.56	■■■□□ 2
PVT1-219	ENST00000523427	CACNA1E	Q15878	2313 aa		27.56	■■■□□ 2
PVT1-219	ENST00000523427	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	27.55	■■■□□ 2
PVT1-219	ENST00000523427	COCH	O43405	550 aa		27.55	■■■□□ 2
PVT1-219	ENST00000523427	TACC1	O75410	805 aa		27.55	■■■□□ 2
PVT1-219	ENST00000523427	IRF1	P10914	325 aa		27.55	■■■□□ 2
PVT1-219	ENST00000523427	CHRM1	P11229	460 aa	Predicted RBP	27.55	■■■□□ 2
PVT1-219	ENST00000523427	TNFRSF4	P43489	277 aa		27.55	■■■□□ 2
PVT1-219	ENST00000523427	GAD2	Q05329	585 aa		27.55	■■■□□ 2
PVT1-219	ENST00000523427	TRPC3	Q13507	836 aa		27.55	■■■□□ 2
PVT1-219	ENST00000523427	ANO4	Q32M45	955 aa		27.55	■■■□□ 2
PVT1-219	ENST00000523427	HSF5	Q4G112	596 aa	Predicted RBP	27.55	■■■□□ 2
PVT1-219	ENST00000523427	BTBD8	Q5XKL5	378 aa		27.55	■■■□□ 2
PVT1-219	ENST00000523427	KCNK16	Q96T55	309 aa		27.55	■■■□□ 2
PVT1-219	ENST00000523427	MED10	Q9BTT4	135 aa		27.55	■■■□□ 2
PVT1-219	ENST00000523427	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	27.55	■■■□□ 2
PVT1-219	ENST00000523427	PTPRD	P23468	1912 aa		27.54	■■■□□ 2
PVT1-219	ENST00000523427	ATRX	P46100	2492 aa		27.54	■■■□□ 2
PVT1-219	ENST00000523427	RPL6	Q02878	288 aa	Known RBP	27.54	■■■□□ 2
PVT1-219	ENST00000523427	AKAP13	Q12802	2813 aa		27.54	■■■□□ 2
PVT1-219	ENST00000523427	BYSL	Q13895	437 aa	Known RBP	27.54	■■■□□ 2
PVT1-219	ENST00000523427	NELFCD	Q8IXH7	590 aa		27.54	■■■□□ 2
PVT1-219	ENST00000523427	ZNF513	Q8N8E2	541 aa	Predicted RBP	27.54	■■■□□ 2
PVT1-219	ENST00000523427	B3GALNT2	Q8NCR0	500 aa		27.54	■■■□□ 2
PVT1-219	ENST00000523427	SCAMP5	Q8TAC9	235 aa		27.54	■■■□□ 2
PVT1-219	ENST00000523427	CGRRF1	Q99675	332 aa		27.54	■■■□□ 2
PVT1-219	ENST00000523427	CCSER2	Q9H7U1	834 aa		27.54	■■■□□ 2
PVT1-219	ENST00000523427	E2F8	A0AVK6	867 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	TRIM24	O15164	1050 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	SYT1	P21579	422 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	MYL6	P60660	151 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	ASIC1	P78348	528 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	SIM1	P81133	766 aa	Predicted RBP	27.53	■■■□□ 2
PVT1-219	ENST00000523427	C10orf76	Q5T2E6	689 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	HECTD3	Q5T447	861 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	BBS7	Q8IWZ6	715 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	KIAA1958	Q8N8K9	716 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	GATA6	Q92908	595 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	NACA2	Q9H009	215 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	DEC1	Q9P2X7	70 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	PILRB	Q9UKJ0	227 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	ZZEF1	O43149	2961 aa		27.53	■■■□□ 2
PVT1-219	ENST00000523427	MYO18A	Q92614	2054 aa	Known RBP	27.52	■■■□□ 2
PVT1-219	ENST00000523427		A0A0A0MRY4	1105 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	PHACTR2	O75167	634 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	TULP3	O75386	442 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	RTN3	O95197	1032 aa	Predicted RBP	27.52	■■■□□ 2
PVT1-219	ENST00000523427	CDH8	P55286	799 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	CYP24A1	Q07973	514 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	SLC39A14	Q15043	492 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	SLC23A3	Q6PIS1	610 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	HDDC3	Q8N4P3	179 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	PDZD8	Q8NEN9	1154 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	ZCCHC14	Q8WYQ9	949 aa	Known RBP	27.52	■■■□□ 2
PVT1-219	ENST00000523427	ZNF516	Q92618	1163 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	WBP2	Q969T9	261 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	ELMO3	Q96BJ8	720 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	AGPAT3	Q9NRZ7	376 aa		27.52	■■■□□ 2
PVT1-219	ENST00000523427	HOXB3	P14651	431 aa	Predicted RBP	27.51	■■□□□ 1.99
PVT1-219	ENST00000523427	HOXB2	P14652	356 aa		27.51	■■□□□ 1.99
PVT1-219	ENST00000523427	PI4KA	P42356	2102 aa		27.51	■■□□□ 1.99
PVT1-219	ENST00000523427	PSMD6	Q15008	389 aa		27.51	■■□□□ 1.99
PVT1-219	ENST00000523427	TMEM25	Q86YD3	366 aa		27.51	■■□□□ 1.99
PVT1-219	ENST00000523427	PHTF2	Q8N3S3	785 aa		27.51	■■□□□ 1.99
PVT1-219	ENST00000523427	DHX58	Q96C10	678 aa		27.51	■■□□□ 1.99
PVT1-219	ENST00000523427	ZFR	Q96KR1	1074 aa	Known RBP	27.51	■■□□□ 1.99
PVT1-219	ENST00000523427	SMYD3	Q9H7B4	428 aa		27.51	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms