RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 ELAC1Q9H777 363 aaKnown RBP8.46□□□□□ -1.06
LSM1-202ENST00000520286 UBN1Q9NPG3 1134 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 KCNE5Q9UJ90 142 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 TMEM98Q9Y2Y6 226 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 CHST2Q9Y4C5 530 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 ABCC8Q09428 1581 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 BTBD11A6QL63 1104 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 CYP27B1O15528 508 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 GPR42O15529 346 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 HOXC11O43248 304 aaPredicted RBP8.45□□□□□ -1.06
LSM1-202ENST00000520286 TRIAP1O43715 76 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 SNX2O60749 519 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 ZFPL1O95159 310 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 TK1P04183 234 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 RXRAP19793 462 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 ADORA2AP29274 412 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 UQCRC1P31930 480 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 RPS7P62081 194 aaKnown RBP8.45□□□□□ -1.06
LSM1-202ENST00000520286 TRIM60Q495X7 471 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 VPS53Q5VIR6 699 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 ICE2Q659A1 982 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 LRRC55Q6ZSA7 311 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 MICALCLQ6ZW33 695 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 GDF7Q7Z4P5 450 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 HEATR4Q86WZ0 1026 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 TICAM2Q86XR7 235 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 NME8Q8N427 588 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 ZNF808Q8N4W9 903 aaPredicted RBP8.45□□□□□ -1.06
LSM1-202ENST00000520286 SNX19Q92543 992 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 TMEM125Q96AQ2 219 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 C3orf49Q96BT1 292 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 COG8Q96MW5 612 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 KCNC2Q96PR1 638 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 BRD8Q9H0E9 1235 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 FSCN3Q9NQT6 498 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 TRPM5Q9NZQ8 1165 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 SERTAD3Q9UJW9 196 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 USP22Q9UPT9 525 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 SSX2IPQ9Y2D8 614 aa8.45□□□□□ -1.06
LSM1-202ENST00000520286 TDRD9Q8NDG6 1382 aaKnown RBP8.45□□□□□ -1.06
LSM1-202ENST00000520286 MYADML2A6NDP7 307 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 A6NLC8 198 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 ADM5C9JUS6 153 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 AGPSO00116 658 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 DHHO43323 396 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 PPP6R2O75170 966 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 TAF5LO75529 589 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 PLATP00750 562 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 COMTP21964 271 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 YY1P25490 414 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 GATMP50440 423 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 PDE6CP51160 858 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 SCNN1GP51170 649 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 SEC24CP53992 1094 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 TRPC3Q13507 836 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 TUBB3Q13509 450 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 FHL3Q13643 280 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 ZNF124Q15973 351 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 TMEM132CQ8N3T6 1108 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 OSBPL9Q96SU4 736 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 NUDT22Q9BRQ3 303 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 TWSG1Q9GZX9 223 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 VPS16Q9H269 839 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 SMC4Q9NTJ3 1288 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 C19orf53Q9UNZ5 99 aaPredicted RBP8.44□□□□□ -1.06
LSM1-202ENST00000520286 FPGT-TNNI3KV9GXZ4 949 aa8.44□□□□□ -1.06
LSM1-202ENST00000520286 FAM90A18PA6NE21 464 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 FAM90A16PA6NEW6 464 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 FAM90A9PA6NNJ1 464 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 FAM90A5PA8MXJ8 464 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 CFIP05156 583 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 FAM90A15PP0C7V4 464 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 FAM90A14PP0C7W9 464 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 RBL1P28749 1068 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 EPHA3P29320 983 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 ELF1P32519 619 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 TUBP50607 506 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 UBE3AQ05086 875 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 SLC12A1Q13621 1099 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 RPS6KA2Q15349 733 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 TTC22Q5TAA0 569 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 DEPDC1Q5TB30 811 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 B3GNTL1Q67FW5 361 aaPredicted RBP8.43□□□□□ -1.06
LSM1-202ENST00000520286 MAMDC4Q6UXC1 1216 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 FAM109AQ8N4B1 249 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 FEZF2Q8TBJ5 459 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 ATRIPQ8WXE1 791 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 GOLGA1Q92805 767 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 SORCS3Q9UPU3 1222 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 SNX14Q9Y5W7 946 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 SCINQ9Y6U3 715 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 XDHP47989 1333 aa8.43□□□□□ -1.06
LSM1-202ENST00000520286 TRIM24O15164 1050 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 KRT38O76015 456 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 RECQL4O94761 1208 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 SCAF4O95104 1147 aaKnown RBP8.42□□□□□ -1.06
LSM1-202ENST00000520286 CD4P01730 458 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 KRT9P35527 623 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 CXADRP78310 365 aa8.42□□□□□ -1.06
LSM1-202ENST00000520286 TIAL1Q01085 375 aaKnown RBP eCLIP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms