RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, humanhuman

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-204ENST00000503492 VSTM1Q6UX27 236 aa23.5■■□□□ 1.35
PCDH1-204ENST00000503492 ZDHHC17Q8IUH5 632 aa23.5■■□□□ 1.35
PCDH1-204ENST00000503492 PPIL6Q8IXY8 311 aa23.5■■□□□ 1.35
PCDH1-204ENST00000503492 NAT8LQ8N9F0 302 aa23.5■■□□□ 1.35
PCDH1-204ENST00000503492 SOCS4Q8WXH5 440 aa23.5■■□□□ 1.35
PCDH1-204ENST00000503492 TTC25Q96NG3 672 aa23.5■■□□□ 1.35
PCDH1-204ENST00000503492 TSPAN18Q96SJ8 248 aa23.5■■□□□ 1.35
PCDH1-204ENST00000503492 PRMT1Q99873 361 aaKnown RBP23.5■■□□□ 1.35
PCDH1-204ENST00000503492 SNX25Q9H3E2 840 aa23.5■■□□□ 1.35
PCDH1-204ENST00000503492 DDX20Q9UHI6 824 aaKnown RBP23.5■■□□□ 1.35
PCDH1-204ENST00000503492 GNAT1P11488 350 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 TFE3P19532 575 aaPredicted RBP23.49■■□□□ 1.35
PCDH1-204ENST00000503492 NRLP54845 237 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 PDIA2Q13087 525 aaKnown RBP23.49■■□□□ 1.35
PCDH1-204ENST00000503492 KRT81Q14533 505 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 BOLA3Q53S33 107 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 CENPUQ71F23 418 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 SPATS2Q86XZ4 545 aaKnown RBP23.49■■□□□ 1.35
PCDH1-204ENST00000503492 ZBED8Q8IZ13 594 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 TAB3Q8N5C8 712 aaPredicted RBP23.49■■□□□ 1.35
PCDH1-204ENST00000503492 TRPV1Q8NER1 839 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 APPL2Q8NEU8 664 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 BANF1O75531 89 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 CTGFP29279 349 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 BCAT1P54687 386 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 HDAC4P56524 1084 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 SNX16P57768 344 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 TFDP2Q14188 446 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 CA9Q16790 459 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 TEKT4Q8WW24 435 aa23.49■■□□□ 1.35
PCDH1-204ENST00000503492 SNRNP25Q9BV90 132 aaKnown RBP23.49■■□□□ 1.35
PCDH1-204ENST00000503492 TMEM120BA0PK00 339 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 GCAP28676 217 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 PDK2Q15119 407 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 SV2CQ496J9 727 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 FAM47CQ5HY64 1035 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 TWF2Q6IBS0 349 aaKnown RBP23.48■■□□□ 1.35
PCDH1-204ENST00000503492 P3H4Q92791 437 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 CCDC134Q9H6E4 229 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 PCDH18Q9HCL0 1135 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 TCRBV7S3A2A0A539 114 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 DCAF8L1A6NGE4 600 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 AKR1A1P14550 325 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 RPL34P49207 117 aaKnown RBP23.48■■□□□ 1.35
PCDH1-204ENST00000503492 HIF1AQ16665 826 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 RGMBQ6NW40 437 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 ZC3H18Q86VM9 953 aaKnown RBP23.48■■□□□ 1.35
PCDH1-204ENST00000503492 OSTM1Q86WC4 334 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 CCDC13Q8IYE1 715 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 C10orf67Q8IYJ2 551 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 SLC2A14Q8TDB8 520 aa23.48■■□□□ 1.35
PCDH1-204ENST00000503492 PTGESO14684 152 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 C6orf222P0C671 652 aaPredicted RBP23.47■■□□□ 1.35
PCDH1-204ENST00000503492 LCP1P13796 627 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 LILRA4P59901 499 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 ROR1Q01973 937 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 FNBP1LQ5T0N5 605 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 DARS2Q6PI48 645 aaKnown RBP23.47■■□□□ 1.35
PCDH1-204ENST00000503492 C1orf228Q6PIY5 440 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 SLC26A9Q7LBE3 791 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 CPLX4Q7Z7G2 160 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 SAPCD2Q86UD0 394 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 MAP7D3Q8IWC1 876 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 ADGRF2Q8IZF7 708 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 PQLC3Q8N755 202 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 ADAM33Q9BZ11 813 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 GGA2Q9UJY4 613 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 EXOC1LA0A1B0GW35 172 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 C6orf89Q6UWU4 347 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 CAPN12Q6ZSI9 719 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 MICALCLQ6ZW33 695 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 PLD5Q8N7P1 536 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 TRAF3IP1Q8TDR0 691 aaPredicted RBP23.47■■□□□ 1.35
PCDH1-204ENST00000503492 SEC16BQ96JE7 1060 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 TBCBQ99426 244 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 C11orf84Q9BUA3 381 aaPredicted RBP23.47■■□□□ 1.35
PCDH1-204ENST00000503492 VPS37BQ9H9H4 285 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 ZFYVE28Q9HCC9 887 aa23.47■■□□□ 1.35
PCDH1-204ENST00000503492 ATXN2Q99700 1313 aaKnown RBP23.46■■□□□ 1.35
PCDH1-204ENST00000503492 HUS1O60921 280 aa23.46■■□□□ 1.35
PCDH1-204ENST00000503492 TKTP29401 623 aaKnown RBP23.46■■□□□ 1.35
PCDH1-204ENST00000503492 IFNAR2P48551 515 aa23.46■■□□□ 1.35
PCDH1-204ENST00000503492 MSS51Q4VC12 460 aa23.46■■□□□ 1.35
PCDH1-204ENST00000503492 ANKRD20A8PQ5CZ79 823 aa23.46■■□□□ 1.35
PCDH1-204ENST00000503492 TAF2Q6P1X5 1199 aa23.46■■□□□ 1.35
PCDH1-204ENST00000503492 ANKMY2Q8IV38 441 aa23.46■■□□□ 1.35
PCDH1-204ENST00000503492 MAML1Q92585 1016 aa23.46■■□□□ 1.35
PCDH1-204ENST00000503492 ZFP42Q96MM3 310 aa23.46■■□□□ 1.35
PCDH1-204ENST00000503492 MDM4O15151 490 aa23.45■■□□□ 1.35
PCDH1-204ENST00000503492 DUSP11O75319 330 aaKnown RBP23.45■■□□□ 1.35
PCDH1-204ENST00000503492 TMEM63AO94886 807 aa23.45■■□□□ 1.35
PCDH1-204ENST00000503492 IGFBP6P24592 240 aaPredicted RBP23.45■■□□□ 1.35
PCDH1-204ENST00000503492 PTPN9P43378 593 aa23.45■■□□□ 1.35
PCDH1-204ENST00000503492 CRHR2Q13324 411 aa23.45■■□□□ 1.35
PCDH1-204ENST00000503492 MPP2Q14168 576 aa23.45■■□□□ 1.35
PCDH1-204ENST00000503492 RIBC1Q8N443 379 aaPredicted RBP23.45■■□□□ 1.35
PCDH1-204ENST00000503492 PCDH19Q8TAB3 1148 aa23.45■■□□□ 1.35
PCDH1-204ENST00000503492 MGARPQ8TDB4 240 aa23.45■■□□□ 1.35
PCDH1-204ENST00000503492 BRAFP15056 766 aa23.45■■□□□ 1.34
PCDH1-204ENST00000503492 STIP1P31948 543 aaKnown RBP23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms