RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 FARSBQ9NSD9 589 aaKnown RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 EHD2Q9NZN4 543 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 AIPL1Q9NZN9 384 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 ARL2BPQ9Y2Y0 163 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 NEUROG3Q9Y4Z2 214 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 TTC41PQ6P2S7 1318 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 KNL1Q8NG31 2342 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 COL3A1P02461 1466 aaPredicted RBP5.34□□□□□ -1.56
USP54-216ENST00000498143 CCDC163A0A0D9SF12 145 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 CCL16O15467 120 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 NMT2O60551 498 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 F13A1P00488 732 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 NPPAP01160 153 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 ITGB1P05556 798 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 PYGLP06737 847 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 CPEP16870 476 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 PRKACAP17612 351 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 ELAVL4P26378 380 aaKnown RBP5.34□□□□□ -1.56
USP54-216ENST00000498143 PRKAR1BP31321 381 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 FCHO2Q0JRZ9 810 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 NFYCQ13952 458 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 PDIA5Q14554 519 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 TBC1D25Q3MII6 688 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 TSGA10IPQ3SY00 556 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 DCAF17Q5H9S7 520 aaPredicted RBP5.34□□□□□ -1.56
USP54-216ENST00000498143 SWSAP1Q6NVH7 229 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 CWC27Q6UX04 472 aaKnown RBP5.34□□□□□ -1.56
USP54-216ENST00000498143 DNAJB7Q7Z6W7 309 aaPredicted RBP5.34□□□□□ -1.56
USP54-216ENST00000498143 C14orf80Q86SX3 495 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 TRPV1Q8NER1 839 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 STAMBPL1Q96FJ0 436 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 LOXL4Q96JB6 756 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 PDGFCQ9NRA1 345 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 IL17BQ9UHF5 180 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 TPCN1Q9ULQ1 816 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 MSRB2Q9Y3D2 182 aa5.34□□□□□ -1.56
USP54-216ENST00000498143 TEX51A0A1B0GUA7 166 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 SLC38A8A6NNN8 435 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 KLHL41O60662 606 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 SEC24DO94855 1032 aaPredicted RBP5.33□□□□□ -1.56
USP54-216ENST00000498143 JMJD7P0C870 316 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 GP1BBP13224 206 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 SOX5P35711 763 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 DLX2Q07687 328 aaPredicted RBP5.33□□□□□ -1.56
USP54-216ENST00000498143 CAMK2BQ13554 666 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 GRM2Q14416 872 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 ZXDCQ2QGD7 858 aaPredicted RBP5.33□□□□□ -1.56
USP54-216ENST00000498143 CLEC17AQ6ZS10 378 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 NUDCD3Q8IVD9 361 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 NUP93Q8N1F7 819 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 SPEM1Q8N4L4 309 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 AOPEPQ8N6M6 819 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 PDZD8Q8NEN9 1154 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 CDC26Q8NHZ8 85 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 SPPL3Q8TCT6 385 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 FGF11Q92914 225 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 FRMD6Q96NE9 622 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 GORASP1Q9BQQ3 440 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 SLC26A6Q9BXS9 759 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 TPSD1Q9BZJ3 242 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 RIC8AQ9NPQ8 531 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 C2CD2Q9Y426 696 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 SPEF1Q9Y4P9 236 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 TBX10O75333 385 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 CIB2O75838 187 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 ESRRBO95718 433 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 FESP07332 822 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 DLATP10515 647 aaKnown RBP5.33□□□□□ -1.56
USP54-216ENST00000498143 ITGA4P13612 1032 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 PAMP19021 973 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 SNAP25P60880 206 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 CDC42EP1Q00587 391 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 TFCP2Q12800 502 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 DPYDQ12882 1025 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 DHX34Q14147 1143 aaKnown RBP5.33□□□□□ -1.56
USP54-216ENST00000498143 ANKRD20A4Q4UJ75 823 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 ANKRD20A8PQ5CZ79 823 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 ANKRD20A2Q5SQ80 823 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 ANKRD20A1Q5TYW2 823 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 ANKRD20A3Q5VUR7 823 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 ADALQ6DHV7 355 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 BRAPQ7Z569 592 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 METTL23Q86XA0 190 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 UNC45BQ8IWX7 931 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 FAM160A2Q8N612 972 aaPredicted RBP5.33□□□□□ -1.56
USP54-216ENST00000498143 DEFB119Q8N690 84 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 PNPLA1Q8N8W4 532 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 ZNF248Q8NDW4 579 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 PKD2L2Q9NZM6 624 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 GPR75-ASB3A0A0A6YYF3 556 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 RAD51BO15315 384 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 YKT6O15498 198 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 PI15O43692 258 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 ADAMTS4O75173 837 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 CSRP1P21291 193 aaKnown RBP5.33□□□□□ -1.56
USP54-216ENST00000498143 CTHP32929 405 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 HADHAP40939 763 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 VAV2P52735 878 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 SLC12A2P55011 1212 aa5.33□□□□□ -1.56
USP54-216ENST00000498143 VBP1P61758 197 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms