RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 RGL4Q8IZJ4 473 aa17.6■□□□□ 0.41
VIM-208ENST00000497849 NAT16Q8N8M0 369 aa17.6■□□□□ 0.41
VIM-208ENST00000497849 TTLL2Q9BWV7 592 aa17.6■□□□□ 0.41
VIM-208ENST00000497849 FAM124BQ9H5Z6 455 aaPredicted RBP17.6■□□□□ 0.41
VIM-208ENST00000497849 GDAP2Q9NXN4 497 aa17.6■□□□□ 0.41
VIM-208ENST00000497849 SNX9Q9Y5X1 595 aa17.6■□□□□ 0.41
VIM-208ENST00000497849 ZNF217O75362 1048 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 TULP3O75386 442 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 DKK1O94907 266 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 IL18RAPO95256 599 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 BDNFP23560 247 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 PCSK1P29120 753 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 LHX1P48742 406 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 TFAMQ00059 246 aaKnown RBP17.59■□□□□ 0.41
VIM-208ENST00000497849 GAD2Q05329 585 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 SOWAHAQ2M3V2 549 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 VSTM1Q6UX27 236 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 TRMT11Q7Z4G4 463 aaKnown RBP17.59■□□□□ 0.41
VIM-208ENST00000497849 ADGRF2Q8IZF7 708 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 TOP6BLQ8N6T0 577 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 BAHD1Q8TBE0 780 aaPredicted RBP17.59■□□□□ 0.41
VIM-208ENST00000497849 MYLPFQ96A32 169 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 ERLEC1Q96DZ1 483 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 CDK5RAP3Q96JB5 506 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 ACOX2Q99424 681 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 CRTAC1Q9NQ79 661 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 MAGEC2Q9UBF1 373 aaPredicted RBP17.59■□□□□ 0.41
VIM-208ENST00000497849 SUSD2Q9UGT4 822 aa17.59■□□□□ 0.41
VIM-208ENST00000497849 TRABD2BA6NFA1 517 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 TRIM24O15164 1050 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 PLCG1P19174 1290 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 LMO2P25791 158 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 NTSR1P30989 418 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 GRIK1P39086 918 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 PSMC1P62191 440 aaKnown RBP17.58■□□□□ 0.4
VIM-208ENST00000497849 CAMK2BQ13554 666 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 DHX8Q14562 1220 aaKnown RBP17.58■□□□□ 0.4
VIM-208ENST00000497849 C10orf76Q5T2E6 689 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 C4orf50Q6ZRC1 276 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 SCUBE3Q8IX30 993 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 LRRC52Q8N7C0 313 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 TERB1Q8NA31 727 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 ZSWIM2Q8NEG5 633 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 IPO4Q8TEX9 1081 aaKnown RBP17.58■□□□□ 0.4
VIM-208ENST00000497849 CEP295NLQ96MC4 621 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 UBL7Q96S82 380 aaPredicted RBP17.58■□□□□ 0.4
VIM-208ENST00000497849 SYT15Q9BQS2 421 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 LLPHQ9BRT6 129 aaKnown RBP17.58■□□□□ 0.4
VIM-208ENST00000497849 SLC6A17Q9H1V8 727 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 IL21RQ9HBE5 538 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 STARD13Q9Y3M8 1113 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 NAV2Q8IVL1 2488 aa17.58■□□□□ 0.4
VIM-208ENST00000497849 ZNF462Q96JM2 2506 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 KNL1Q8NG31 2342 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 VWA3AA6NCI4 1184 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 CYSRT1A8MQ03 144 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 ABL1P00519 1130 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 ATXN1LP0C7T5 689 aaKnown RBP17.57■□□□□ 0.4
VIM-208ENST00000497849 GNSP15586 552 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 PPP3CCP48454 512 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 EGFLAMQ63HQ2 1017 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 SPRYD3Q8NCJ5 442 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 SETD7Q8WTS6 366 aaKnown RBP17.57■□□□□ 0.4
VIM-208ENST00000497849 KBTBD7Q8WVZ9 684 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 POMGNT1Q8WZA1 660 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 ZFRQ96KR1 1074 aaKnown RBP17.57■□□□□ 0.4
VIM-208ENST00000497849 ZDHHC5Q9C0B5 715 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 ST6GALNAC4Q9H4F1 302 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 ZHX3Q9H4I2 956 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 BLOC1S4Q9NUP1 217 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 TBC1D14Q9P2M4 693 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 DEC1Q9P2X7 70 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 SIX4Q9UIU6 781 aa17.57■□□□□ 0.4
VIM-208ENST00000497849 CABIN1Q9Y6J0 2220 aa17.56■□□□□ 0.4
VIM-208ENST00000497849 E2F8A0AVK6 867 aa17.56■□□□□ 0.4
VIM-208ENST00000497849 HOXC11O43248 304 aaPredicted RBP17.56■□□□□ 0.4
VIM-208ENST00000497849 NDUFS2O75306 463 aa17.56■□□□□ 0.4
VIM-208ENST00000497849 MBL2P11226 248 aaPredicted RBP17.56■□□□□ 0.4
VIM-208ENST00000497849 ABCD1P33897 745 aa17.56■□□□□ 0.4
VIM-208ENST00000497849 NOP14P78316 857 aaKnown RBP17.56■□□□□ 0.4
VIM-208ENST00000497849 TAF10Q12962 218 aa17.56■□□□□ 0.4
VIM-208ENST00000497849 WDR45BQ5MNZ6 344 aa17.56■□□□□ 0.4
VIM-208ENST00000497849 SYCP2LQ5T4T6 812 aa17.56■□□□□ 0.4
VIM-208ENST00000497849 LIMS2Q7Z4I7 341 aa17.56■□□□□ 0.4
VIM-208ENST00000497849 DDX42Q86XP3 938 aaKnown RBP eCLIP17.56■□□□□ 0.4
VIM-208ENST00000497849 CSGALNACT2Q8N6G5 542 aa17.56■□□□□ 0.4
VIM-208ENST00000497849 CDH9Q9ULB4 789 aa17.56■□□□□ 0.4
VIM-208ENST00000497849 F8VP50 259 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 ZNF883P0CG24 379 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 ANXA13P27216 316 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 BNC1Q01954 994 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 CYP27A1Q02318 531 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 BTBD8Q5XKL5 378 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 DBX2Q6ZNG2 339 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 TMEM25Q86YD3 366 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 BRSK2Q8IWQ3 736 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 DNASE2BQ8WZ79 361 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 SLC39A7Q92504 469 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 FOXJ1Q92949 421 aa17.55■□□□□ 0.4
VIM-208ENST00000497849 OTUB2Q96DC9 234 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms