RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 STXBP5Q5T5C0 1151 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ACBD5Q5T8D3 534 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 DNAJC24Q6P3W2 148 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 CDHR3Q6ZTQ4 885 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 PASD1Q8IV76 773 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 NUDCD3Q8IVD9 361 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 RTKN2Q8IZC4 609 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ICA1LQ8NDH6 482 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 PYDC1Q8WXC3 89 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ZNF516Q92618 1163 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 HAUS1Q96CS2 278 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 MRPS26Q9BYN8 205 aaKnown RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ZNF518BQ9C0D4 1074 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 RBM38Q9H0Z9 239 aaKnown RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 KCNH7Q9NS40 1196 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 C6orf203Q9P0P8 240 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ADAMTS6Q9UKP5 1117 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 CHMP2BQ9UQN3 213 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 DMTF1Q9Y222 760 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ZNF510Q9Y2H8 683 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 MAD1L1Q9Y6D9 718 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 SF3B1O75533 1304 aaKnown RBP eCLIP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 A0A0B4J269 797 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 TCRBV7S3A2A0A539 114 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 TRIM49D1C9J1S8 452 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 F8VP50 259 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 CHADO15335 359 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 EXTL3O43909 919 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 BPGMP07738 259 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 CFHP08603 1231 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 WEE2P0C1S8 567 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 SLURP2P0DP57 97 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 CRHR1P34998 444 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 FDFT1P37268 417 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 CRKP46108 304 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 SCNN1DP51172 638 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 HSD17B4P51659 736 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ZNF132P52740 706 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ALDH18A1P54886 795 aaKnown RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 UBXN2AP68543 259 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 TBL3Q12788 808 aaKnown RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 USP4Q13107 963 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 SNAPC2Q13487 334 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 TUBB3Q13509 450 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 CYLC2Q14093 348 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 FAM102BQ5T8I3 360 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ANO5Q75V66 913 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 WDR75Q8IWA0 830 aaKnown RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 AHI1Q8N157 1196 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 SLC25A41Q8N5S1 370 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 KCNN1Q92952 543 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 MCEEQ96PE7 176 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ZNF696Q9H7X3 374 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 USP29Q9HBJ7 922 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 AGO4Q9HCK5 861 aaKnown RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 GPRC5CQ9NQ84 441 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 KMT5AQ9NQR1 393 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 TBC1D22BQ9NU19 505 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 CLIC5Q9NZA1 410 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 FAM198AQ9UFP1 575 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 RAB26Q9ULW5 256 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 PADI4Q9UM07 663 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 AGTPBP1Q9UPW5 1226 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 PCDHB4Q9Y5E5 795 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 AHDC1Q5TGY3 1603 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 COL2A1P02458 1487 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ARHGAP10A1A4S6 786 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 ARHGAP42A6NI28 874 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 H0YCG3 227 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 APOC4-APOC2K7ER74 178 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 DDX39AO00148 427 aaKnown RBP10.06□□□□□ -0.8
SYNE1-230ENST00000495090 MAFGO15525 162 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 HNRNPRO43390 633 aaKnown RBP10.06□□□□□ -0.8
SYNE1-230ENST00000495090 PFDN1O60925 122 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 RFPL1O75677 317 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 PIAS1O75925 651 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 CLPTM1O96005 669 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 APOC2P02655 101 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 TFAP2AP05549 437 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 C6orf222P0C671 652 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-230ENST00000495090 PRDX6P30041 224 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 OGDHQ02218 1023 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 SLC25A11Q02978 314 aaKnown RBP10.06□□□□□ -0.8
SYNE1-230ENST00000495090 FOLH1Q04609 750 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 DPYSL3Q14195 570 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 KCNJ11Q14654 390 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 ADRM1Q16186 407 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 MDH1BQ5I0G3 518 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 TDRD10Q5VZ19 366 aaKnown RBP10.06□□□□□ -0.8
SYNE1-230ENST00000495090 CES4AQ5XG92 561 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 LPCAT4Q643R3 524 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 TXNRD3NBQ6F5E7 133 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 DCUN1D2Q6PH85 259 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 C1orf228Q6PIY5 440 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 POTEAQ6S8J7 498 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 TMEM270Q6UE05 265 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 SH3BP5LQ7L8J4 393 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 TMC7Q7Z402 723 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 KBTBD6Q86V97 674 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 IGDCC3Q8IVU1 814 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms