RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 TMEM253P0C7T8 217 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 LCP1P13796 627 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 HOXB8P17481 243 aaPredicted RBP14.6□□□□□ -0.07
C9orf3-221ENST00000489562 PPP3CCP48454 512 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 GALCP54803 685 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 PTP4A2Q12974 167 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 SDHAF4Q5VUM1 108 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 PM20D1Q6GTS8 502 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 LLGL2Q6P1M3 1020 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 GPRIN1Q7Z2K8 1008 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 ARHGAP18Q8N392 663 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 LEMD2Q8NC56 503 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 PDZD8Q8NEN9 1154 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 GIPC2Q8TF65 315 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 ZNF653Q96CK0 615 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 TRIM44Q96DX7 344 aaPredicted RBP14.6□□□□□ -0.07
C9orf3-221ENST00000489562 PRKD2Q9BZL6 878 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 ULBP1Q9BZM6 244 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 IGFLR1Q9H665 355 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 AVENQ9NQS1 362 aaPredicted RBP14.6□□□□□ -0.07
C9orf3-221ENST00000489562 ASNSD1Q9NWL6 643 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 SCML2Q9UQR0 700 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 PCDHA13Q9Y5I0 950 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 SCINQ9Y6U3 715 aa14.6□□□□□ -0.07
C9orf3-221ENST00000489562 PAPSS1O43252 624 aaPredicted RBP14.59□□□□□ -0.07
C9orf3-221ENST00000489562 GABBR2O75899 941 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 GLI1P08151 1106 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 PSEN1P49768 467 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 VAV2P52735 878 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 DAOAP59103 153 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 GPC5P78333 572 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 MRPS5P82675 430 aaKnown RBP14.59□□□□□ -0.07
C9orf3-221ENST00000489562 SLC6A3Q01959 620 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 ADAM15Q13444 863 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 COL19A1Q14993 1142 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 EFHC1Q5JVL4 640 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 OR6B2Q6IFH4 312 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 SLC26A9Q7LBE3 791 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 DNAJB7Q7Z6W7 309 aaPredicted RBP14.59□□□□□ -0.07
C9orf3-221ENST00000489562 KIAA1328Q86T90 577 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 XYLT1Q86Y38 959 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 DEFB123Q8N688 67 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 C3orf20Q8ND61 904 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 VN1R2Q8NFZ6 395 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 SCAMP5Q8TAC9 235 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 GPR152Q8TDT2 470 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 GOLGA1Q92805 767 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 FBXO32Q969P5 355 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 MCRS1Q96EZ8 462 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 ZNF830Q96NB3 372 aaPredicted RBP14.59□□□□□ -0.07
C9orf3-221ENST00000489562 MRPL47Q9HD33 250 aaKnown RBP14.59□□□□□ -0.07
C9orf3-221ENST00000489562 PARVAQ9NVD7 372 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 CNOT8Q9UFF9 292 aaKnown RBP14.59□□□□□ -0.07
C9orf3-221ENST00000489562 ADGRG1Q9Y653 693 aa14.59□□□□□ -0.07
C9orf3-221ENST00000489562 NOTCH4Q99466 2003 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 CCDC195A0A1B0GUA6 201 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 CCL16O15467 120 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 HSF2BPO75031 334 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 GLP2RO95838 553 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 USP17L7P0C7H9 530 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 HMGA1P17096 107 aaKnown RBP14.58□□□□□ -0.08
C9orf3-221ENST00000489562 PTPN2P17706 415 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 ABCB4P21439 1286 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 RRM1P23921 792 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 GTF2F1P35269 517 aaKnown RBP eCLIP14.58□□□□□ -0.08
C9orf3-221ENST00000489562 IFRD2Q12894 506 aaPredicted RBP14.58□□□□□ -0.08
C9orf3-221ENST00000489562 CTC1Q2NKJ3 1217 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 PABPC1LQ4VXU2 614 aaKnown RBP14.58□□□□□ -0.08
C9orf3-221ENST00000489562 FAM102AQ5T9C2 384 aaPredicted RBP14.58□□□□□ -0.08
C9orf3-221ENST00000489562 CYP4A22Q5TCH4 519 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 PLEKHA7Q6IQ23 1121 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 ANKRD54Q6NXT1 300 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 DNAJC24Q6P3W2 148 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 OLFML1Q6UWY5 402 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 FAM183BPQ6ZVS7 135 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 ARCQ7LC44 396 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 MON1AQ86VX9 555 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 SCUBE3Q8IX30 993 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 RHOT2Q8IXI1 618 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 ACRBPQ8NEB7 543 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 CDX2Q99626 313 aaPredicted RBP14.58□□□□□ -0.08
C9orf3-221ENST00000489562 DESI2Q9BSY9 194 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 SELENOOQ9BVL4 669 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 THAP2Q9H0W7 228 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 ASAH2Q9NR71 780 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 TLR8Q9NR97 1041 aaKnown RBP14.58□□□□□ -0.08
C9orf3-221ENST00000489562 UVRAGQ9P2Y5 699 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 TJP2Q9UDY2 1190 aa14.58□□□□□ -0.08
C9orf3-221ENST00000489562 MAGED2Q9UNF1 606 aaPredicted RBP14.58□□□□□ -0.08
C9orf3-221ENST00000489562 REXO2Q9Y3B8 237 aaKnown RBP14.58□□□□□ -0.08
C9orf3-221ENST00000489562 BRWD1Q9NSI6 2320 aa14.57□□□□□ -0.08
C9orf3-221ENST00000489562 TCRBV5S1A1TA0A578 114 aa14.57□□□□□ -0.08
C9orf3-221ENST00000489562 PIK3R2O00459 728 aa14.57□□□□□ -0.08
C9orf3-221ENST00000489562 PJA2O43164 708 aa14.57□□□□□ -0.08
C9orf3-221ENST00000489562 RFPL2O75678 378 aa14.57□□□□□ -0.08
C9orf3-221ENST00000489562 CYP1A2P05177 515 aa14.57□□□□□ -0.08
C9orf3-221ENST00000489562 CDC25CP30307 473 aa14.57□□□□□ -0.08
C9orf3-221ENST00000489562 EPHA5P54756 1037 aa14.57□□□□□ -0.08
C9orf3-221ENST00000489562 USP46P62068 366 aa14.57□□□□□ -0.08
C9orf3-221ENST00000489562 TAF10Q12962 218 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms