RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 FAM26FQ5R3K3 315 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 EMC10Q5UCC4 262 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 FOXD4L5Q5VV16 416 aaPredicted RBP14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 HS2ST1Q7LGA3 356 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 SYT12Q8IV01 421 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 TMEFF1Q8IYR6 380 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 OR6B3Q8NGW1 331 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 OLIG1Q8TAK6 271 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 ZNF507Q8TCN5 953 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 WHAMMQ8TF30 809 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 SCFD1Q8WVM8 642 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 RLN3Q8WXF3 142 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 FOXD4L4Q8WXT5 416 aaPredicted RBP14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 WBP2Q969T9 261 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 CGRRF1Q99675 332 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 B3GNT5Q9BYG0 378 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 XYLT2Q9H1B5 865 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 BLZF1Q9H2G9 400 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 POLMQ9NP87 494 aaPredicted RBP14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 TRPM5Q9NZQ8 1165 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 CFAP97Q9P2B7 532 aa14.74□□□□□ -0.05
SQSTM1-208ENST00000485412 ATXN2Q99700 1313 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 SPAARA0A1B0GVQ0 90 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 KIAA0391O15091 583 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 EIF3DO15371 548 aaKnown RBP eCLIP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 STX6O43752 255 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 KLF8O95600 359 aaPredicted RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 APODP05090 189 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 ENGP17813 658 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 PTPN1P18031 435 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 TNNI1P19237 187 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 ANXA13P27216 316 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 RDXP35241 583 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 TIE1P35590 1138 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 GNL1P36915 607 aaPredicted RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 P2RY2P41231 377 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 DPP6P42658 865 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 PGFP49763 221 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 ATXN3P54252 364 aaPredicted RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 CDH8P55286 799 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 NOP14P78316 857 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 SIM1P81133 766 aaPredicted RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 SLC7A9P82251 487 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 KDSRQ06136 332 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 RING1Q06587 406 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 BYSLQ13895 437 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 PSMD6Q15008 389 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 DHCR24Q15392 516 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 WDR72Q3MJ13 1102 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 LRSAM1Q6UWE0 723 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 ADGRG2Q8IZP9 1017 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 PGBD3Q8N328 593 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 HDDC3Q8N4P3 179 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 ALLCQ8N6M5 410 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 TXNDC5Q8NBS9 432 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 ZFRQ96KR1 1074 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 C8orf48Q96LL4 319 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 SDCBP2Q9H190 292 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 SNX25Q9H3E2 840 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 SMYD3Q9H7B4 428 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 NXF1Q9UBU9 619 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 KLK13Q9UKR3 277 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 MSRB2Q9Y3D2 182 aa14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 R3HCC1Q9Y3T6 440 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-208ENST00000485412 SGK1O00141 431 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 TRIM66O15016 1216 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 SPTLC2O15270 562 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 TACC1O75410 805 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 CFIP05156 583 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 PFKLP17858 780 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 PTGER3P43115 390 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 SURF1Q15526 300 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 MAPRE1Q15691 268 aaKnown RBP14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 FOXD4L6Q3SYB3 417 aaPredicted RBP14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 HSF5Q4G112 596 aaPredicted RBP14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 EOGTQ5NDL2 527 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 LYSMD4Q5XG99 296 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 RHBDF2Q6PJF5 856 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 FOXD4L3Q6VB84 417 aaPredicted RBP14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 PAQR9Q6ZVX9 377 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 GRAMD1CQ8IYS0 662 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 IL17RCQ8NAC3 791 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 SCAMP5Q8TAC9 235 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 HMGB4Q8WW32 186 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 FNBP1Q96RU3 617 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 KCNK16Q96T55 309 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 PNKPQ96T60 521 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 CACNA1EQ15878 2313 aa14.72□□□□□ -0.05
SQSTM1-208ENST00000485412 SLC9A3R1O14745 358 aaPredicted RBP14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 COCHO43405 550 aa14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 ADAM23O75077 832 aa14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 KAT7O95251 611 aa14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 ORC1Q13415 861 aa14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 SLC23A3Q6PIS1 610 aa14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 SCARA5Q6ZMJ2 495 aa14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 PHTF2Q8N3S3 785 aa14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 B3GALNT2Q8NCR0 500 aa14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 INTS4Q96HW7 963 aaKnown RBP14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 C7orf25Q9BPX7 421 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms