RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	PRKCQ	Q04759	706 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	RING1	Q06587	406 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	PDE4C	Q08493	712 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	SIGLEC14	Q08ET2	396 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	EIF4EBP2	Q13542	120 aa	Predicted RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	DRAP1	Q14919	205 aa	Predicted RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	PDGFRL	Q15198	375 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	E2F5	Q15329	346 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	SYCP1	Q15431	976 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	TAF12	Q16514	161 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	SLC5A9	Q2M3M2	681 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	RNF43	Q68DV7	783 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	SCARA5	Q6ZMJ2	495 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	SLC26A9	Q7LBE3	791 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	PIGZ	Q86VD9	579 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	TTC30A	Q86WT1	665 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	ARHGEF19	Q8IW93	802 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	FAM217A	Q8IXS0	508 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	TTC9B	Q8N6N2	239 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	ZNF557	Q8N988	423 aa	Predicted RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	C12orf29	Q8N999	325 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	TMEM35B	Q8NCS4	154 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	NEK11	Q8NG66	645 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	CCDC26	Q8TAB7	109 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	UBE2Q2	Q8WVN8	375 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	DDX1	Q92499	740 aa	Known RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	BAP1	Q92560	729 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	EDA	Q92838	391 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	IRF7	Q92985	503 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	EXOC4	Q96A65	974 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	PGAP3	Q96FM1	320 aa	Predicted RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	MRFAP1L1	Q96HT8	127 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	FAM84A	Q96KN4	292 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	HEXIM2	Q96MH2	286 aa	Known RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	PGLYRP2	Q96PD5	576 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	SPAG5	Q96R06	1193 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	NELL2	Q99435	816 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	PRRX2	Q99811	253 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	CORO1B	Q9BR76	489 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	SYT11	Q9BT88	431 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	DDX23	Q9BUQ8	820 aa	Known RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	C1QTNF1	Q9BXJ1	281 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	KCNK12	Q9HB15	430 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	ABCC13	Q9NSE7	274 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	TDP1	Q9NUW8	608 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	TMEM30A	Q9NV96	361 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	WDR35	Q9P2L0	1181 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	TBC1D14	Q9P2M4	693 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	LCMT1	Q9UIC8	334 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	STOML2	Q9UJZ1	356 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	NOCT	Q9UK39	431 aa	Known RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	STRIP2	Q9ULQ0	834 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	CAPN11	Q9UMQ6	739 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	ZNF510	Q9Y2H8	683 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	PCDHB4	Q9Y5E5	795 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	KMT2E	Q8IZD2	1858 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	PLXND1	Q9Y4D7	1925 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	MYO18A	Q92614	2054 aa	Known RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	COL4A3	Q01955	1670 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	TRAV19	A0A0A6YYK7	116 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	SSU72P8	A0A1W2PR75	194 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525		A0A1W2PRU2	124 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	RNF225	M0QZC1	329 aa	Predicted RBP	5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	FOXN3	O00409	490 aa	Predicted RBP	5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	GPR37L1	O60883	481 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	HSF2BP	O75031	334 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	LRRN2	O75325	713 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	SERPINC1	P01008	464 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	IGLV3-27	P01718	113 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	SPATA31D3	P0C874	917 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	RALA	P11233	206 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	UNG	P13051	313 aa	Predicted RBP	5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	CCDC130	P13994	396 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	CD58	P19256	250 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	MMP8	P22894	467 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	CACNA2D1	P54289	1103 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	AIF1	P55008	147 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	ARPP19	P56211	112 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	UBASH3A	P57075	661 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	STARD6	P59095	220 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	DAOA	P59103	153 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	COG7	P83436	770 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	ZBED6	P86452	979 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	GOLGA8F	Q08AF8	430 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	GOLGA8DP	Q0D2H9	430 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	TAF10	Q12962	218 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	PDCL	Q13371	301 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	ZNF77	Q15935	545 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	DDR2	Q16832	855 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	PREPL	Q4J6C6	727 aa	Predicted RBP	5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	EFHC1	Q5JVL4	640 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	MPP7	Q5T2T1	576 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	HECTD3	Q5T447	861 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	SPECC1L	Q69YQ0	1117 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	SPATA31D4	Q6ZUB0	917 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	TOGARAM2	Q6ZUX3	1019 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	BHLHA9	Q7RTU4	235 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	LUZP1	Q86V48	1076 aa		5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	RALGPS2	Q86X27	583 aa	Predicted RBP	5.35	□□□□□ -1.55
HDAC6-223	ENST00000480525	PHF13	Q86YI8	300 aa	Predicted RBP	5.35	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms