RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 FIZ1Q96SL8 496 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 PRRX2Q99811 253 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 HAPLN2Q9GZV7 340 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 ST6GALNAC4Q9H4F1 302 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 RPF1Q9H9Y2 349 aaKnown RBP7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 KCNK12Q9HB15 430 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 IGSF9Q9P2J2 1179 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 EPS15L1Q9UBC2 864 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 SEL1LQ9UBV2 794 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 CDY1Q9Y6F8 540 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 SCN1AP35498 2009 aa7.38□□□□□ -1.23
CCDC88A-213ENST00000476903 TSC2P49815 1807 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 A0A0B4J269 797 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 TTC26A0AVF1 554 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 LACTBL1A8MY62 500 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 NPIPB6E9PJ23 425 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 CCL16O15467 120 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 FAM189A1O60320 539 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 POU2F2P09086 479 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 INHBBP09529 407 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 GAP43P17677 238 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 CYP3A5P20815 502 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 CDK11BP21127 795 aaKnown RBP7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 LRPAP1P30533 357 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 ELF1P32519 619 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 STAT6P42226 847 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 NASPP49321 788 aaPredicted RBP7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 STK38Q15208 465 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 ZC2HC1CQ53FD0 456 aaPredicted RBP7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 SLC8B1Q6J4K2 584 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 KRTAP5-3Q6L8H2 238 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 RSPO2Q6UXX9 243 aaPredicted RBP7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 GET4Q7L5D6 327 aaPredicted RBP7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 GRASPQ7Z6J2 395 aaPredicted RBP7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 UBE3DQ7Z6J8 389 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 SFR1Q86XK3 245 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 CD302Q8IX05 232 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 LINC00301Q8NCQ3 95 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 FBXO15Q8NCQ5 510 aaPredicted RBP7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 APPL2Q8NEU8 664 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 ZNF461Q8TAF7 563 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 C20orf173Q96LM9 149 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 ZNF396Q96N95 335 aaPredicted RBP7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 MYADMQ96S97 322 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 MSTO1Q9BUK6 570 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 MFSD1Q9H3U5 465 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 SMOC2Q9H3U7 446 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 MRPL44Q9H9J2 332 aaKnown RBP7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 CACNA2D2Q9NY47 1150 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 TUBGCP4Q9UGJ1 667 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 UBQLN1Q9UMX0 589 aaKnown RBP7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 DUSP12Q9UNI6 340 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 EXOC7Q9UPT5 735 aa7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 ZFP37Q9Y6Q3 630 aaPredicted RBP7.37□□□□□ -1.23
CCDC88A-213ENST00000476903 MYMKA6NI61 221 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 M0QZQ0 153 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 PRRG1O14668 218 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 SPTLC2O15270 562 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 TBC1D4O60343 1298 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 YEATS4O95619 227 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 ADRB2P07550 413 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 LAMP2P13473 410 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 IDEP14735 1019 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 ATF2P15336 505 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 AVPR2P30518 371 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 CLCN7P51798 805 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 VCPP55072 806 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 ARPP19P56211 112 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 POU5F1Q01860 360 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 ROR1Q01973 937 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 YWHAHQ04917 246 aaPredicted RBP7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 SPAG1Q07617 926 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 ZNF211Q13398 564 aaPredicted RBP7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 MRPL58Q14197 206 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 TMEM132DQ14C87 1099 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 POSTNQ15063 836 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 ZBTB6Q15916 424 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 ENOX2Q16206 610 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 CTXN3Q4LDR2 81 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 ZBTB41Q5SVQ8 909 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 TPGS2Q68CL5 300 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 ADALQ6DHV7 355 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 ZNF280DQ6N043 979 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 SLC39A4Q6P5W5 647 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 ZNF720Q7Z2F6 126 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 BEST2Q8NFU1 509 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 POMGNT1Q8WZA1 660 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 DNAJC19Q96DA6 116 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 LRRC27Q9C0I9 530 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 OLFML3Q9NRN5 406 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 SEMA3GQ9NS98 782 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 FBXL5Q9UKA1 691 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 CPSF3Q9UKF6 684 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 FBXL21Q9UKT6 434 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 AGO2Q9UKV8 859 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 CDH7Q9ULB5 785 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 KCNH3Q9ULD8 1083 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 MAFFQ9ULX9 164 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 DERAQ9Y315 318 aa7.36□□□□□ -1.23
CCDC88A-213ENST00000476903 STYXL1Q9Y6J8 313 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms