RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ABL1P00519 1130 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 P4HA1P13674 534 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 RPL13P26373 211 aaKnown RBP14.95□□□□□ -0.02
UPF3A-204ENST00000475218 HOXA6P31267 233 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 NRLP54845 237 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 GRSF1Q12849 480 aaKnown RBP eCLIP14.95□□□□□ -0.02
UPF3A-204ENST00000475218 ZNF658Q5TYW1 1059 aaPredicted RBP14.95□□□□□ -0.02
UPF3A-204ENST00000475218 ANKRD40Q6AI12 368 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 FILIP1Q7Z7B0 1213 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 SFTPA1Q8IWL2 248 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 OVCA2Q8WZ82 227 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 FBXO32Q969P5 355 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 SLITRK1Q96PX8 696 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 GSDMAQ96QA5 445 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 P2RY13Q9BPV8 354 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 NIF3L1Q9GZT8 377 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 CCSER2Q9H7U1 834 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 TRIM49BA6NDI0 452 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 CILPO75339 1184 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 CLSTN1O94985 981 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 CYP17A1P05093 508 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 KRT13P13646 458 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 PDE6CP51160 858 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 MAP3K7CLP57077 242 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 LPAL2Q16609 132 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 CBWD6Q4V339 395 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 CBWD3Q5JTY5 395 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 CBWD5Q5RIA9 395 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 HEATR6Q6AI08 1181 aaKnown RBP14.94□□□□□ -0.02
UPF3A-204ENST00000475218 CLEC20AQ6ZU45 233 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 ADGRG2Q8IZP9 1017 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 RMDN1Q96DB5 314 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 HNRNPABQ99729 332 aaKnown RBP14.94□□□□□ -0.02
UPF3A-204ENST00000475218 ARID3AQ99856 593 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 CYP3A43Q9HB55 503 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 PARD6AQ9NPB6 346 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 OSER1Q9NX31 292 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 CFAP97Q9P2B7 532 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 ATP8B3O60423 1300 aa14.94□□□□□ -0.02
UPF3A-204ENST00000475218 CD44P16070 742 aaKnown RBP14.93□□□□□ -0.02
UPF3A-204ENST00000475218 CD58P19256 250 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 BMP6P22004 513 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 ADORA2BP29275 332 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 GTF2H1P32780 548 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 PXNP49023 591 aaPredicted RBP14.93□□□□□ -0.02
UPF3A-204ENST00000475218 PPP2R5DQ14738 602 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 LONP2Q86WA8 852 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 KIAA1958Q8N8K9 716 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 PDZD8Q8NEN9 1154 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 CD101Q93033 1021 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 TIGD1Q96MW7 591 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 GREM1O60565 184 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 DRD1P21728 446 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 KRT39Q6A163 491 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 RHBDF2Q6PJF5 856 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 WDR5BQ86VZ2 330 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 C12orf40Q86WS4 652 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 TATDN2Q93075 761 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 RMND1Q9NWS8 449 aa14.93□□□□□ -0.02
UPF3A-204ENST00000475218 K7EQS6 105 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 CETN3O15182 167 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 GADD45BO75293 160 aaPredicted RBP14.92□□□□□ -0.02
UPF3A-204ENST00000475218 NFATC1O95644 943 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 TBX18O95935 607 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 MBL2P11226 248 aaPredicted RBP14.92□□□□□ -0.02
UPF3A-204ENST00000475218 MXI1P50539 228 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 TUBP50607 506 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 DHCR24Q15392 516 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 HECTD3Q5T447 861 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 CYFIP2Q96F07 1278 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 HINFPQ9BQA5 517 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 NT5C1AQ9BXI3 368 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 NMUR1Q9HB89 426 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 COMMD8Q9NX08 183 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 RAB20Q9NX57 234 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 NCDNQ9UBB6 729 aa14.92□□□□□ -0.02
UPF3A-204ENST00000475218 CYP26A1O43174 497 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 FAM200BP0CF97 657 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 ID4P47928 161 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 SLC6A11P48066 632 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 AMPD2Q01433 879 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 PPP1R26Q5T8A7 1209 aaPredicted RBP14.91□□□□□ -0.02
UPF3A-204ENST00000475218 ISM2Q6H9L7 571 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 PHTF2Q8N3S3 785 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 SLC4A11Q8NBS3 891 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 FBXL13Q8NEE6 735 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 RPLP0P6Q8NHW5 317 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 IMPG2Q9BZV3 1241 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 MAN1B1Q9UKM7 699 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 COQ4Q9Y3A0 265 aa14.91□□□□□ -0.02
UPF3A-204ENST00000475218 SLC16A3O15427 465 aaKnown RBP14.9□□□□□ -0.02
UPF3A-204ENST00000475218 EPB41P11171 864 aaKnown RBP14.9□□□□□ -0.02
UPF3A-204ENST00000475218 RAD23BP54727 409 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 FBXO43Q4G163 708 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 ZNF394Q53GI3 561 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 SCD5Q86SK9 330 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 SMARCE1Q969G3 411 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 SLC35C1Q96A29 364 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 JAKMIP2Q96AA8 810 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 DUSP9Q99956 384 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms