RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 KRT81Q14533 505 aa4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 PGS1Q32NB8 556 aa4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 ZNF585BQ52M93 769 aa4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 ZNF628Q5EBL2 1059 aa4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 ANKRD13BQ86YJ7 626 aa4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 ZBTB8BQ8NAP8 495 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 MAFAQ8NHW3 353 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 GBA2Q9HCG7 927 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 MDFICQ9P1T7 246 aa4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 TMX2Q9Y320 296 aa4.2□□□□□ -1.74
CCDC88A-212ENST00000474059 CES2O00748 559 aa4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 CDK11BP21127 795 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 MT3P25713 68 aa4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 CDKN2AP42771 156 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 NPY5RQ15761 445 aa4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 KHDC1LQ5JSQ8 128 aa4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 BPIFB1Q8TDL5 484 aa4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 ASPSCR1Q9BZE9 553 aa4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 MLXIPLQ9NP71 852 aa4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 TRMT13Q9NUP7 481 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 ZNF112Q9UJU3 913 aa4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 DRG1Q9Y295 367 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-212ENST00000474059 SLC28A2O43868 658 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 DTNBO60941 627 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 TULP3O75386 442 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 CYP2C9P11712 490 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 RPS13P62277 151 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 MLC1Q15049 377 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 KRTAP27-1Q3LI81 207 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 RANBP10Q6VN20 620 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 DCDC5Q6ZRR9 648 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 UBE2Q1Q7Z7E8 422 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 PIM3Q86V86 326 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 ADHFE1Q8IWW8 467 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 DCP1BQ8IZD4 617 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 MMP21Q8N119 569 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 MVB12AQ96EY5 273 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 ZNF479Q96JC4 524 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 SLCO5A1Q9H2Y9 848 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 TMX1Q9H3N1 280 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 TMEM8AQ9HCN3 771 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 PI4KBQ9UBF8 816 aa4.18□□□□□ -1.74
CCDC88A-212ENST00000474059 SBNO2Q9Y2G9 1366 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 TCF20Q9UGU0 1960 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 TMEM233B4DJY2 109 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 ERVV-2B6SEH9 535 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 RNF8O76064 485 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 BCAT1P54687 386 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 EVA1CP58658 441 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 KRT17Q04695 432 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 SLC14A1Q13336 389 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 FAM50AQ14320 339 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 ODF3L2Q3SX64 289 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 PLA1AQ53H76 456 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 TMEM240Q5SV17 173 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 TMEM65Q6PI78 240 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 DNAJC5GQ8N7S2 189 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 EDC3Q96F86 508 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 THOC3Q96J01 351 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 CGRRF1Q99675 332 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 TRIM54Q9BYV2 358 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 DPH1Q9BZG8 443 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 ARMT1Q9H993 441 aa4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 SEMA4BQ9NPR2 832 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-212ENST00000474059 M0R3H8 397 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 KRT10P13645 584 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 NPR1P16066 1061 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 MCM5P33992 734 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 RECQLP46063 649 aaPredicted RBP4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 SUMO2P61956 95 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 AMPD3Q01432 767 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 FHL3Q13643 280 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 MGAT5BQ3V5L5 792 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 CERCAMQ5T4B2 595 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 SLC15A4Q8N697 577 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 PRPF38AQ8NAV1 312 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 MPLKIPQ8TAP9 179 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 ASB5Q8WWX0 329 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 PPP2R3CQ969Q6 453 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 STAP2Q9UGK3 403 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 CPA4Q9UI42 421 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 ICKQ9UPZ9 632 aa4.16□□□□□ -1.74
CCDC88A-212ENST00000474059 AGPSO00116 658 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 THP07101 528 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 PHKG2P15735 406 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 PRKAG1P54619 331 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 TIAL1Q01085 375 aaKnown RBP eCLIP4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 CTBP1Q13363 440 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 KCNB1Q14721 858 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 C4orf46Q504U0 113 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 DAB2IPQ5VWQ8 1189 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 ANO7Q6IWH7 933 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 LVRNQ6Q4G3 990 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 RFX6Q8HWS3 928 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 DNAJB14Q8TBM8 379 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 MAML1Q92585 1016 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 CDK5RAP3Q96JB5 506 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 SMURF2Q9HAU4 748 aa4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 SARS2Q9NP81 518 aaKnown RBP4.15□□□□□ -1.75
CCDC88A-212ENST00000474059 DNMT3BQ9UBC3 853 aaKnown RBP4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms