RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 HMGA1P17096 107 aaKnown RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 POU3F3P20264 500 aaPredicted RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 RRM1P23921 792 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 KLRC2P26717 231 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 RFC1P35251 1148 aaPredicted RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 GRIK1P39086 918 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 SLC19A1P41440 591 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 TUFMP49411 452 aaKnown RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 GPR15P49685 360 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 RGS7P49802 495 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 CLCN4P51793 760 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 HADHBP55084 474 aaKnown RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 USP46P62068 366 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 SLC6A3Q01959 620 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 PDCLQ13371 301 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 SMC1AQ14683 1233 aaKnown RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 SDHAF4Q5VUM1 108 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 MMS22LQ6ZRQ5 1243 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 BHLHA9Q7RTU4 235 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 GPRIN1Q7Z2K8 1008 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 DNAJB7Q7Z6W7 309 aaPredicted RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 SCD5Q86SK9 330 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 NUP93Q8N1F7 819 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 SCML4Q8N228 414 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 C1orf131Q8NDD1 294 aaKnown RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 GPR152Q8TDT2 470 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 TIFAQ96CG3 184 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 TRIM44Q96DX7 344 aaPredicted RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 SMARCD1Q96GM5 515 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 MYRFLQ96LU7 910 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 ZMYND15Q9H091 742 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 LMAN2LQ9H0V9 348 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 TTYH1Q9H313 450 aaPredicted RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 ZNF576Q9H609 170 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 PNPLA8Q9NP80 782 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 AVENQ9NQS1 362 aaPredicted RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 SEPT11Q9NVA2 429 aaKnown RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 COMMD8Q9NX08 183 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 ABI2Q9NYB9 513 aaPredicted RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 FNDC1Q4ZHG4 1894 aaPredicted RBP6.27□□□□□ -1.41
USP39-213ENST00000467885 CITO14578 2027 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 A0A0A6YYK5 440 aaPredicted RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 SOX1O00570 391 aaPredicted RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 ZSCAN12O43309 604 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 NRDCO43847 1150 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 ENDOD1O94919 500 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 GJB6O95452 261 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 USP17L7P0C7H9 530 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 MYBL1P10243 752 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 KRT3P12035 628 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 LCP1P13796 627 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 CPB1P15086 417 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 ATF6P18850 670 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 ABCB4P21439 1286 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 ACADSBP45954 432 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 NSFP46459 744 aaKnown RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 TKTL1P51854 596 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 BCAT1P54687 386 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 GSCP56915 257 aaPredicted RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 RPL7AP62424 266 aaKnown RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 RPL10AP62906 217 aaKnown RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 MRPS5P82675 430 aaKnown RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 KIF5AQ12840 1032 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 EIF4EBP2Q13542 120 aaPredicted RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 MTMR3Q13615 1198 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 GRIN2CQ14957 1233 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 CYP4A22Q5TCH4 519 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 SYPL2Q5VXT5 272 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 PPP2R2DQ66LE6 453 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 TRNP1Q6NT89 227 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 PPP1R2P3Q6NXS1 205 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 TMEM184AQ6ZMB5 413 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 RTL10Q7L3V2 364 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 ARCQ7LC44 396 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 SLFN11Q7Z7L1 901 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 ADGRD2Q7Z7M1 963 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 RBM23Q86U06 439 aaKnown RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 ZSCAN30Q86W11 494 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 SCN4BQ8IWT1 228 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 RNF10Q8N5U6 811 aaKnown RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 ARFGAP1Q8N6T3 406 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 KREMEN2Q8NCW0 462 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 JOSD2Q8TAC2 188 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 FEZF2Q8TBJ5 459 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 GIPC2Q8TF65 315 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 CLEC4CQ8WTT0 213 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 HDAC7Q8WUI4 952 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 NT5C3BQ969T7 300 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 MRPL38Q96DV4 380 aaKnown RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 PIWIL1Q96J94 861 aaKnown RBP6.26□□□□□ -1.41
USP39-213ENST00000467885 CEP295NLQ96MC4 621 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 C11orf70Q9BRQ4 267 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 TTLL2Q9BWV7 592 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 EMILIN2Q9BXX0 1053 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 LRRC3Q9BY71 257 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 TRIM7Q9C029 511 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 MIS12Q9H081 205 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 NMUR1Q9HB89 426 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 CYP4F11Q9HBI6 524 aa6.26□□□□□ -1.41
USP39-213ENST00000467885 OSGEPQ9NPF4 335 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms